Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03756 ATGCATTTCGCGAATCTCGATGACACTCCGATGTTCCGTCAACAGATGCAGTGTTTGGAGGAAAGTGCAGAATCGTTGCGTGTGAGATGCTGCAAGTTCTATAAAGGATGTCGAAAGTATATGGAAGGTCTTGGAGAGGCATATGATGGGGACATCGCATTTGCAAGTGCCATAGAAAACTTCGGAGGCGGGCAGAATGATCCTCATTTTATTGCTTTGGGAGGACCTGTTTTGACCAAATATACTCTAGCATTGAGAGAAATCAGTACATACAAGGAACTGCTCCGGTTACAAGTAGAGTACATTTTCAATCATCGGTTACAACCGATTGTCAATGTTGACATCAATGAAGTCAAGGAAGCTCGTAAACGTTTTGATAAATCCTCCCTTGTATATGATCAGAGGTATTTCCAACAGCTTTTCTTTGGAATGTTTGATTTGGAAATTGATCAAATTATATGTCGTGAGTACTGTGATCCTTTTGAATCTAATTTGGTAGAGACATTCCAGGAACTGCAGGAGGCAAGAGCATCATTTGAGGAAGCCCGTTTCAATTTGGTTGGCACTCTTAATAACGTTGAGGTGAAGAAGAGATTCGAGTTTTTAGAGGCTGTAACTGGAATTATGGATGCTCATTTTCGATACTTTCAACAGGGGTATCAGCTATTGCATCAGATGGAACCTTTCATCAATGAGATTATGGATTATGTACATCAGTCAAGAGAAAATTACAATAACGAACAGATTCAACTTTATCAAAGAATGCAAGACTACAAGAAACAAGCTTATGAAGAAAGTAGGTTATCCTTGAGTGGTCCCTATGGTTCTCTTCTTGGAGACTCTACACATCCATTTTCTAGGATATCAAATGAGGCAGCAGATGTAGTAATGGAATCTGCTGCGAATGGAAAGGTTCAAATCATTCGGCAAGGGCATCTTTCAAAACGATCCTCCAATTTGAGAGCTGATTGGAAAAGAAGGTATTTTGTTCTTGACAGTCGGGGAATGTTGTACTACTACCGCAAGCCATGGAGCGGGTCATATGGCAGCAATCAACCATCTCCAAAGAGGAATAGCGGCGTTGAAAATGGTTCTGGAATTCTAAGTCGATGGCTTTCTTCTCATTACCATGGAGGCGTTCATGATGAAAGATCCATAGCACGTCATACAGTTAACCTGCTGACATCAACAATCAAGGTTGATGCTGATCAGTCAGATTTGAGATTCTGCTTCAGGATTATTTCGCCTACAAAGAACTATACGTTGCAGGCAGAAAATGCAGTGGACCAGATGGATTGGATGCAAAAGATAAATGGAGTAATTGCTACCTTGTTGACTGTCCAGACACTAGGAACGCCTCCCTCAGCTGACTCAGAAAACGACGACTCTCACTCTGATGACAATATTGAAAAGTCAGAAAGTTATCCAGATGATGATCATGCTTTGAGAACGAAGTCTGCATTGAATAAAACCACCCGTACTAAGCACTTACGTTCGTCTAGAAGTATGAACTTACATACACACACTCTGAGAATTGAAAAGCCAATTGATGTTCTTAGAAGTGTGAGCGGAAATGATAAATGTGCTGATTGTGGTAAACCTGAACCAGAGTGGGCATCCTTAAACCTTGGCATCCTCATATGCATTGAGTGTTCTGGTGTTCATCGTAATCTTGGTGTACATATATCAAAAGTAAGATCGCTGACACTCGATGTTAAAGTTTGGGATTCCTCAGTCTTAAGTATGCTTAAATCACTAGGCAATCTTTTTTCAAACTCAGTTTGGGAGGAGTTGTTGCATTCACAGGGTAATTTGCAAACTGTAGACACCCTTGCTAGTTCATCCAAGGAAAATGAAGAGGAGATATTCCATGCAAGAAAGCCAAAACATGATGATCCGATTTTAGTAAAGGAAATGTTCATTCATGCAAAGTATTGTGAGAAAATATTTATTCCCCGGATCACGGATAGCCACCCTATCCATTCACTAGCGCAACAGTTGCAGGAAAGCATCTGTGCAAATGACAAAAAAGCAGTGTACCAGCTTATTGTTAAGTCGAATGTTGACGTCAATGCCATCGGTTGTCAAGCATTGTCTGGTGACAATTTGGACATGGCTTCAAGTAATTCAAACATTGCATCTCAAAGTGAAAATCAGGTCGTTGAGGACGTAAAAGATGGCTCTAGCGCGCTTCACCTGGCTTGCCTAAATAGTGACATTGGCATGGTGGAGCTACTCCTACAGCTTGGGGCAGATATAAATGCTTCCGATTCTAGAGGTCGGACACCACTTCATTGTTCTATTATTGGAGGGAAGAATGCAGCTGCAAAAGTGCTTATCTCGAGATATACTGTGCTGAATATTGATAAGTTTGCGGAGATTTGCAGGGGAGCCAATACATATGTGGCAGATAAAGAAGGCAACACTCCTATTAAGCTTGCATCAGAATCCATCTGCGTTGACAAAGAAATTATCAATCTCTTGACAAGCAGATAA 2496 0.4099 MHFANLDDTPMFRQQMQCLEESAESLRVRCCKFYKGCRKYMEGLGEAYDGDIAFASAIENFGGGQNDPHFIALGGPVLTKYTLALREISTYKELLRLQVEYIFNHRLQPIVNVDINEVKEARKRFDKSSLVYDQRYFQQLFFGMFDLEIDQIICREYCDPFESNLVETFQELQEARASFEEARFNLVGTLNNVEVKKRFEFLEAVTGIMDAHFRYFQQGYQLLHQMEPFINEIMDYVHQSRENYNNEQIQLYQRMQDYKKQAYEESRLSLSGPYGSLLGDSTHPFSRISNEAADVVMESAANGKVQIIRQGHLSKRSSNLRADWKRRYFVLDSRGMLYYYRKPWSGSYGSNQPSPKRNSGVENGSGILSRWLSSHYHGGVHDERSIARHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAENAVDQMDWMQKINGVIATLLTVQTLGTPPSADSENDDSHSDDNIEKSESYPDDDHALRTKSALNKTTRTKHLRSSRSMNLHTHTLRIEKPIDVLRSVSGNDKCADCGKPEPEWASLNLGILICIECSGVHRNLGVHISKVRSLTLDVKVWDSSVLSMLKSLGNLFSNSVWEELLHSQGNLQTVDTLASSSKENEEEIFHARKPKHDDPILVKEMFIHAKYCEKIFIPRITDSHPIHSLAQQLQESICANDKKAVYQLIVKSNVDVNAIGCQALSGDNLDMASSNSNIASQSENQVVEDVKDGSSALHLACLNSDIGMVELLLQLGADINASDSRGRTPLHCSIIGGKNAAAKVLISRYTVLNIDKFAEICRGANTYVADKEGNTPIKLASESICVDKEIINLLTSR 831
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03756 831 CDD ArfGap 516 645 - -
Vian1g03756 831 Gene3D Arf GTPase activating protein 493 657 IPR038508 -
Vian1g03756 831 Pfam Ankyrin repeats (many copies) 728 780 IPR002110 GO:0005515
Vian1g03756 831 CDD PH_ACAP 309 446 - -
Vian1g03756 831 Pfam BAR domain of APPL family 6 134 IPR004148 GO:0005515|GO:0005737
Vian1g03756 831 Pfam BAR domain of APPL family 163 247 IPR004148 GO:0005515|GO:0005737
Vian1g03756 831 ProSiteProfiles Ankyrin repeat region circular profile. 726 757 - -
Vian1g03756 831 ProSiteProfiles PH domain profile. 306 442 IPR001849 -
Vian1g03756 831 SUPERFAMILY PH domain-like 217 442 - -
Vian1g03756 831 Gene3D - 700 827 IPR036770 -
Vian1g03756 831 CDD BAR_SFC_plant 15 229 IPR035670 -
Vian1g03756 831 Pfam Putative GTPase activating protein for Arf 516 629 IPR001164 GO:0005096
Vian1g03756 831 SMART PH_update 307 444 IPR001849 -
Vian1g03756 831 Gene3D Arfaptin homology (AH) domain/BAR domain 147 264 IPR027267 -
Vian1g03756 831 Gene3D Arfaptin homology (AH) domain/BAR domain 4 140 IPR027267 -
Vian1g03756 831 ProSiteProfiles Ankyrin repeat profile. 726 758 IPR002110 GO:0005515
Vian1g03756 831 MobiDBLite consensus disorder prediction 451 501 - -
Vian1g03756 831 SMART arf_gap_3 513 658 IPR001164 GO:0005096
Vian1g03756 831 PRINTS HIV Rev interacting protein signature 567 588 IPR001164 GO:0005096
Vian1g03756 831 PRINTS HIV Rev interacting protein signature 525 544 IPR001164 GO:0005096
Vian1g03756 831 PRINTS HIV Rev interacting protein signature 544 561 IPR001164 GO:0005096
Vian1g03756 831 SUPERFAMILY ArfGap/RecO-like zinc finger 512 652 IPR037278 -
Vian1g03756 831 SUPERFAMILY BAR/IMD domain-like 6 329 IPR027267 -
Vian1g03756 831 Gene3D - 299 450 IPR011993 -
Vian1g03756 831 ProSiteProfiles ARF GTPase-activating proteins domain profile. 513 658 IPR001164 GO:0005096
Vian1g03756 831 SMART ANK_2a 726 755 IPR002110 GO:0005515
Vian1g03756 831 SMART ANK_2a 759 788 IPR002110 GO:0005515
Vian1g03756 831 FunFam ADP-ribosylation factor GTPase-activating protein AGD1 495 659 - -
Vian1g03756 831 PANTHER CENTAURIN/ARF 5 829 IPR045258 GO:0005096
Vian1g03756 831 SUPERFAMILY Ankyrin repeat 671 827 IPR036770 -
Vian1g03756 831 Pfam PH domain 308 441 IPR001849 -
Vian1g03756 831 Coils Coil 241 261 - -
Vian1g03756 831 MobiDBLite consensus disorder prediction 459 486 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03756 Vian-Chr1 60468960 60486401 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03756 519 599 C2H2 Transcription Factor Family AT4G21160 52.439 1.45e-19 89.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03756 K12489 - gmx:100792517 1206.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g03756 1 60468960 60486401 Vian1g03756 1 60468960 60486401 ECH