Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03749 ATGGAAAGAGGCCACTTCCTTTGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAAAAGCGTTTCCGTTTTATTTTTCTCGATCTAAGCAAGACGTGTCAGCTGTGGTATCAGCCCTTGTTCAAGTCATTGGTGGCAATCCACTGCCCGAAGATCCAACCACACTTTCTCACTCCACTGCTGTTCAGAATAATTCGAACGAACCATCACATCCACCACAACACCAAGATGCTCGCAAGGTGTTTGCTGAAATTCGTGACGTGTGATGTGGCTATGTGTGAAGGAAGCGCAAGAAAACAGTACAGAGGAGTGAGACAGCGACCATGGGGGAAGTGGGCCGCGGAGATTCGCGACCCGAAGAAAGCAGCCAGAGTTTGGCTGGGAACTTTTCCCACCGCGGAGGCTGCTGCACTTGCTTACGATGAAGCAGCTCTCAGATTCAAAGGAAGCAAAGCCAAGCTCAATTTTCCAGAAAAAGTTCATCTCTCAGGGGAATTAGGTTACCTCACAAATCGTCCACCATCGTTACAAGCCTCTTCAACTCCCTTCCAACTGCTTCCTCGTCACACTCCAACTGATAATGATGCCATTCTTTCTTCCTCTTCTTCGCCATCGTCTTCAACCTTTTCGATGAACTCCGCAGCTTCTTCTTCCGAACCTCCTACCAAACGGAAACCTGATTTCGATGCCAAACAAAAACTACATTAA 708 0.4718 MERGHFLWKKKKKKKKKKKKRFRFIFLDLSKTCQLWYQPLFKSLVAIHCPKIQPHFLTPLLFRIIRTNHHIHHNTKMLARCLLKFVTCDVAMCEGSARKQYRGVRQRPWGKWAAEIRDPKKAARVWLGTFPTAEAAALAYDEAALRFKGSKAKLNFPEKVHLSGELGYLTNRPPSLQASSTPFQLLPRHTPTDNDAILSSSSSPSSSTFSMNSAASSSEPPTKRKPDFDAKQKLH 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03749 235 Gene3D AP2/ERF domain 99 159 IPR036955 GO:0003700|GO:0006355
Vian1g03749 235 PANTHER DNA-BINDING DOMAIN 21 214 IPR044808 GO:0003700|GO:0009873
Vian1g03749 235 CDD AP2 99 158 IPR001471 GO:0003700|GO:0006355
Vian1g03749 235 SMART rav1_2 100 163 IPR001471 GO:0003700|GO:0006355
Vian1g03749 235 SUPERFAMILY DNA-binding domain 100 158 IPR016177 GO:0003677
Vian1g03749 235 MobiDBLite consensus disorder prediction 173 235 - -
Vian1g03749 235 PRINTS Ethylene responsive element binding protein signature 123 139 IPR001471 GO:0003700|GO:0006355
Vian1g03749 235 PRINTS Ethylene responsive element binding protein signature 101 112 IPR001471 GO:0003700|GO:0006355
Vian1g03749 235 Pfam AP2 domain 100 149 IPR001471 GO:0003700|GO:0006355
Vian1g03749 235 ProSiteProfiles AP2/ERF domain profile. 100 157 IPR001471 GO:0003700|GO:0006355
Vian1g03749 235 MobiDBLite consensus disorder prediction 173 220 - -
Vian1g03749 235 FunFam Ethylene-responsive transcription factor 2 99 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03749 Vian-Chr1 60361779 60365122 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03749 98 182 AP2-EREBP Transcription Factor Family AT5G61890 74.419 4.82e-39 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vian1g03749 AP2 1.3e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03749 - - vun:114176190 319.316
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g03749 1 60361779 60365122 Vian1g03749 1 60361779 60365122 ECH
Vian1g03749 1 60361779 60365122 Vian2g01576 2 32720344 32722905 ECH