Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03726 ATGGGTAGAACACCCTGCACTGAAAAACAGCACCTTTTTAAAGGAGCATGGTCTAAGGAGGAAGATGAACTCCTCATTAATTATGTCAACCGTCATGGAGTAGGCAACTGGAGTTCTCTTCCTAAGGCAGCAGGTTTGCTTCGGTGTGGTAAAAGTTGCAGACTCAGATGGATGAATTACCTGAGACCCAACCTCAAGAAGGGAAACTTCACTCAAGAAGAGACTGATCTCATCATTCACCAGCATAGCTTACTAGGAAACAAGTGGTCACAGATAGCAGCATGTTTACCTGGAAGAACAGATAACGAGATAAAAAACTACTGGAACACCCAAATCAAACGTCAGCTCTATGCCAATGGAATCGACCCTGTGACCCATAAACCATTCAACAAGGAAACCACTGACACAACAGACCCACCTGCTAATTCTCAAGTGTCTGAGGTTGCCACCACAAATGAGATTAACAACAACAACAGTAGTTCCAGCTTCACTACGGATGGCAGCAACCAAATCCGCTATTTTAATGTTTTTCTCAATTCAAAGGTGCAGATCAGAAGTGATGGTTACTCAGCAGGTGATAAAGGTGAATGCTCGAACAACTGTAGTGGTGTTACCATAGAGGAAGCTCATCCTCAAATCAACTTGAACCTTTCCTTATCTCCACCACCAAAGCCCCAAGATTTTTGCGTGAACCCTGAATGGCTGCAATCACAAGGGCAACAAGAAGAGCGAGCTTTGTCTGCAAGGAATATGAATGTTGATGGTGGTAAACGAGGTTTGTGTCTGTGGTGCAGTCTAGGGTTGCAAAGTAACCATGCTTGTAGCCGCAAAGACAAGGGTAACAGTGATGATTGCTGA 858 0.4417 MGRTPCTEKQHLFKGAWSKEEDELLINYVNRHGVGNWSSLPKAAGLLRCGKSCRLRWMNYLRPNLKKGNFTQEETDLIIHQHSLLGNKWSQIAACLPGRTDNEIKNYWNTQIKRQLYANGIDPVTHKPFNKETTDTTDPPANSQVSEVATTNEINNNNSSSSFTTDGSNQIRYFNVFLNSKVQIRSDGYSAGDKGECSNNCSGVTIEEAHPQINLNLSLSPPPKPQDFCVNPEWLQSQGQQEERALSARNMNVDGGKRGLCLWCSLGLQSNHACSRKDKGNSDDC 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03726 285 PANTHER F14D16.11-RELATED 1 219 - -
Vian1g03726 285 CDD SANT 16 61 IPR001005 -
Vian1g03726 285 Gene3D - 13 66 - -
Vian1g03726 285 CDD SANT 69 110 IPR001005 -
Vian1g03726 285 FunFam MYB transcription factor 68 129 - -
Vian1g03726 285 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vian1g03726 285 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vian1g03726 285 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Vian1g03726 285 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vian1g03726 285 SMART sant 13 63 IPR001005 -
Vian1g03726 285 SMART sant 66 114 IPR001005 -
Vian1g03726 285 FunFam MYB-related transcription factor 13 66 - -
Vian1g03726 285 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vian1g03726 285 Gene3D - 68 144 - -
Vian1g03726 285 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Vian1g03726 285 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03726 Vian-Chr1 60136495 60138013 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03726 1 222 MYB Transcription Factor Family AT4G38620 51.351 7.11e-71 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vian1g03726 Myb_DNA-binding 1.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03726 K09422 - gmx:100808083 263.848