Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03725 ATGTTTCTTCTCTTCTTAGTCATAGCTGCTGATGTGGCGGTGAAGAGAGCAGAGGCGAAGGAATGTTGGTCACCAAGCAGCTCTTTCAAGGGTCCATGCCTGAGCAACAACAACTGTGCAATCGTGTGTCGGACTGAAGGTGCCACCGGTGGCCAATGTAAAGGCTTCCTTCTCCGCTGCCACTGCAGCAGACCTTGTTTAAATTAA 207 0.5024 MFLLFLVIAADVAVKRAEAKECWSPSSSFKGPCLSNNNCAIVCRTEGATGGQCKGFLLRCHCSRPCLN 68
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03725 68 PRINTS Purothionin signature 21 36 IPR008176 GO:0006952
Vian1g03725 68 PRINTS Purothionin signature 51 65 IPR008176 GO:0006952
Vian1g03725 68 Pfam Gamma-thionin family 22 66 - -
Vian1g03725 68 Gene3D - 19 66 IPR036574 -
Vian1g03725 68 CDD Knot1 31 62 IPR003614 GO:0006952
Vian1g03725 68 PANTHER DEFENSIN-LIKE PROTEIN 1 3 62 - -
Vian1g03725 68 SMART gth_4 21 66 IPR003614 GO:0006952
Vian1g03725 68 SUPERFAMILY Scorpion toxin-like 20 66 IPR036574 -
Vian1g03725 68 ProSitePatterns Gamma-thionins family signature. 20 43 IPR008176 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03725 Vian-Chr1 60114522 60116651 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03725 1 66 Plant Defensins Gene Families AT1G61070 46.970 1.12e-18 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03725 - - gmx:100306228 86.2705