Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03724 ATGGAGACAAAAGTGCTAAGGTTTACTATGTTTCTTCTCTTCCTAGTCATAGCTGCTGATGTGGCAGTGAAGAGAACAGAGGGGAAAGATTGTTGGCTACCAAGCATGACCTTCAAGGGTATATGCATAATCTCCAAACACTGTGCAAAAGCGTGCCTTAACGAAGGTTTCAACGGTGGCAAATGCAAAGGCTTCCTTCCCCACTGCGACTGTGTCTACACTTGTTATTAA 231 0.4416 METKVLRFTMFLLFLVIAADVAVKRTEGKDCWLPSMTFKGICIISKHCAKACLNEGFNGGKCKGFLPHCDCVYTCY 76
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03724 76 ProSitePatterns Gamma-thionins family signature. 29 52 IPR008176 GO:0006952
Vian1g03724 76 SUPERFAMILY Scorpion toxin-like 30 75 IPR036574 -
Vian1g03724 76 Pfam Gamma-thionin family 31 75 - -
Vian1g03724 76 CDD Knot1 40 71 IPR003614 GO:0006952
Vian1g03724 76 PANTHER DEFENSIN-LIKE PROTEIN 1 8 72 - -
Vian1g03724 76 SMART gth_4 30 75 IPR003614 GO:0006952
Vian1g03724 76 Gene3D - 28 75 IPR036574 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03724 Vian-Chr1 60109288 60109602 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03724 6 75 Plant Defensins Gene Families AT1G61070 37.143 3.96e-13 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03724 - - mnt:21396282 73.1738