LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vian1g03723	ATGGAGACAAAAGTGCTAAGGTTTATGTTACTTCTCTTCCTAGTCTTAGCAGATGATGTGACTGTGAAGAGAACAGAAGCTGAAATATGTTGGTCACCAAGCCGCTCTTTCAAGGGTTTATGCTTGAGCAGCGGCAAATGTGCAAGAGTGTGTCGAACCGAAGGTAACACTGGTGGCAAATGCAAAGGCTTCCTTCTCCGCTGTCACTGCAGCTCAACTTGTTGTTGTGGAAATTAA	237	0.4473	METKVLRFMLLLFLVLADDVTVKRTEAEICWSPSRSFKGLCLSSGKCARVCRTEGNTGGKCKGFLLRCHCSSTCCCGN	78

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vian1g03723	78	PANTHER	DEFENSIN-LIKE PROTEIN 1	6	71	-	-
	Vian1g03723	78	SMART	gth_4	29	74	IPR003614	GO:0006952
	Vian1g03723	78	CDD	Knot1	39	70	IPR003614	GO:0006952
	Vian1g03723	78	SUPERFAMILY	Scorpion toxin-like	29	74	IPR036574	-
	Vian1g03723	78	PRINTS	Purothionin signature	29	44	IPR008176	GO:0006952
	Vian1g03723	78	PRINTS	Purothionin signature	59	73	IPR008176	GO:0006952
	Vian1g03723	78	Gene3D	-	27	74	IPR036574	-
	Vian1g03723	78	Pfam	Gamma-thionin family	29	74	-	-

Showing 1 to 8 of 8 entries

Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vian1g03723	Vian-Chr1	60101088	60101408	Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vian1g03723	1	74	Plant Defensins Gene Families	AT2G02130	42.667	2.50e-14	60.1

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vian1g03723	-		-	gmx:102666433	75.0997

Showing 1 to 1 of 1 entries