LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vian1g03722	ATGGAGACAAAAGTGCTGAAGTTTAGTATGTTCCTTCTCTTCTTAGTCTTAGCCGCAGATGTGGCGGTGAAGATAACAGAGGCAAAACTGTGTTGGTCAAGAAGCAAGACCTTCCATGGTTTATGCTTCACCAACAGTAGCTGTGAAGCCAAATGTTTTAACGAATCTTTCACCGGTGGCATGTGTAAGGGCTTCCTCCAGCGCTGCTACTGCTGCATAAATTGTTGA	228	0.4474	METKVLKFSMFLLFLVLAADVAVKITEAKLCWSRSKTFHGLCFTNSSCEAKCFNESFTGGMCKGFLQRCYCCINC	75

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vian1g03722	75	SMART	gth_4	30	75	IPR003614	GO:0006952
	Vian1g03722	75	ProSitePatterns	Gamma-thionins family signature.	29	52	IPR008176	GO:0006952
	Vian1g03722	75	SUPERFAMILY	Scorpion toxin-like	29	75	IPR036574	-
	Vian1g03722	75	PANTHER	DEFENSIN-LIKE PROTEIN 1	6	72	-	-
	Vian1g03722	75	Pfam	Gamma-thionin family	29	75	-	-
	Vian1g03722	75	CDD	Knot1	40	71	IPR003614	GO:0006952
	Vian1g03722	75	Gene3D	-	28	75	IPR036574	-

Showing 1 to 7 of 7 entries

Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vian1g03722	Vian-Chr1	60094594	60094899	Dispersed/Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vian1g03722	6	75	Plant Defensins Gene Families	AT2G02120	40.260	4.72e-16	64.3

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vian1g03722	-		K08531	gmx:547938	65.855

Showing 1 to 1 of 1 entries