Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03722 ATGGAGACAAAAGTGCTGAAGTTTAGTATGTTCCTTCTCTTCTTAGTCTTAGCCGCAGATGTGGCGGTGAAGATAACAGAGGCAAAACTGTGTTGGTCAAGAAGCAAGACCTTCCATGGTTTATGCTTCACCAACAGTAGCTGTGAAGCCAAATGTTTTAACGAATCTTTCACCGGTGGCATGTGTAAGGGCTTCCTCCAGCGCTGCTACTGCTGCATAAATTGTTGA 228 0.4474 METKVLKFSMFLLFLVLAADVAVKITEAKLCWSRSKTFHGLCFTNSSCEAKCFNESFTGGMCKGFLQRCYCCINC 75
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03722 75 SMART gth_4 30 75 IPR003614 GO:0006952
Vian1g03722 75 ProSitePatterns Gamma-thionins family signature. 29 52 IPR008176 GO:0006952
Vian1g03722 75 SUPERFAMILY Scorpion toxin-like 29 75 IPR036574 -
Vian1g03722 75 PANTHER DEFENSIN-LIKE PROTEIN 1 6 72 - -
Vian1g03722 75 Pfam Gamma-thionin family 29 75 - -
Vian1g03722 75 CDD Knot1 40 71 IPR003614 GO:0006952
Vian1g03722 75 Gene3D - 28 75 IPR036574 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03722 Vian-Chr1 60094594 60094899 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03722 6 75 Plant Defensins Gene Families AT2G02120 40.260 4.72e-16 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03722 - K08531 gmx:547938 65.855