Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03721 ATGTTCCTTCTCTTTCTAGTCTTAGCCGCAGATGTGGCGGTGAAGAGAACAGAGGGAAGAGAATGTTGGTCAAAAAGCAAGACCTTCCATGGTTTATGCTTCAGCGACCGTAACTGTGAAACCGTGTGCCTTACCGAAGGTTTTACCGGCGGTAAATGTAAAGGCGTCCTTCACCAATGCTTCTGCAGTGAAATATGTTGA 201 0.4627 MFLLFLVLAADVAVKRTEGRECWSKSKTFHGLCFSDRNCETVCLTEGFTGGKCKGVLHQCFCSEIC 66
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03721 66 CDD Knot1 31 62 IPR003614 GO:0006952
Vian1g03721 66 Gene3D - 19 66 IPR036574 -
Vian1g03721 66 PRINTS Purothionin signature 37 50 IPR008176 GO:0006952
Vian1g03721 66 PRINTS Purothionin signature 21 36 IPR008176 GO:0006952
Vian1g03721 66 PANTHER DEFENSIN-LIKE PROTEIN 1 3 63 - -
Vian1g03721 66 SMART gth_4 21 66 IPR003614 GO:0006952
Vian1g03721 66 ProSitePatterns Gamma-thionins family signature. 20 43 IPR008176 GO:0006952
Vian1g03721 66 Pfam Gamma-thionin family 21 66 - -
Vian1g03721 66 SUPERFAMILY Scorpion toxin-like 20 66 IPR036574 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03721 Vian-Chr1 60088418 60088696 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03721 1 66 Plant Defensins Gene Families AT2G02120 43.939 3.40e-16 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03721 - - gmx:102666433 89.7373