Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03720 ATGCTGAAGTTTAGTATGTTCCTTCTCTTCCTAGTCTTAGCCGCAGATGTGGCGGTGAAGAGAACAGAGGGAAGAGAATGTTGGTCAAGAAGCAAGACCTTCCATGGTTTATGCTTCAGCGACCGTAACTGTGAAACCGTGTGCCATACCGAAGGTTTCACCGGCGGTAAATGTAAAGGCGTCCTTCACCGATGTTTCTGCAGTGAAATATGTTGA 216 0.4676 MLKFSMFLLFLVLAADVAVKRTEGRECWSRSKTFHGLCFSDRNCETVCHTEGFTGGKCKGVLHRCFCSEIC 71
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03720 71 Pfam Gamma-thionin family 26 71 - -
Vian1g03720 71 SMART gth_4 26 71 IPR003614 GO:0006952
Vian1g03720 71 PANTHER DEFENSIN-LIKE PROTEIN 1 4 68 - -
Vian1g03720 71 CDD Knot1 36 67 IPR003614 GO:0006952
Vian1g03720 71 Gene3D - 24 71 IPR036574 -
Vian1g03720 71 PRINTS Purothionin signature 42 55 IPR008176 GO:0006952
Vian1g03720 71 PRINTS Purothionin signature 26 41 IPR008176 GO:0006952
Vian1g03720 71 ProSitePatterns Gamma-thionins family signature. 25 48 IPR008176 GO:0006952
Vian1g03720 71 SUPERFAMILY Scorpion toxin-like 25 71 IPR036574 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03720 Vian-Chr1 60080432 60080725 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03720 2 71 Plant Defensins Gene Families AT2G02120 45.455 1.65e-18 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03720 - - gmx:102666433 90.8929