Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vian1g03719 | ATGGAGAGAAAAACAACACTAGGGTTTATGCTGCTTCTCCTCATAATCTTTGCTTCTGATGTGGCCGTGAAGAGAACGGAGGCGAGAGAATGTTCAACGCCGAGCCACAGTTTCAAGGGTGTATGCATCAGCGACAAGAACTGTGAAGCCGTGTGTAACACCGAAGGTTTTACCGGCGGCAAGTGTGAAGGTTTCCGTCAGCGATGCATGTGTACCAAAATTTGTTGA | 228 | 0.4781 | MERKTTLGFMLLLLIIFASDVAVKRTEARECSTPSHSFKGVCISDKNCEAVCNTEGFTGGKCEGFRQRCMCTKIC | 75 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vian1g03719 | 75 | ProSitePatterns | Gamma-thionins family signature. | 29 | 52 | IPR008176 | GO:0006952 | |
| Vian1g03719 | 75 | SMART | gth_4 | 30 | 75 | IPR003614 | GO:0006952 | |
| Vian1g03719 | 75 | Pfam | Gamma-thionin family | 30 | 75 | - | - | |
| Vian1g03719 | 75 | Gene3D | - | 29 | 75 | IPR036574 | - | |
| Vian1g03719 | 75 | CDD | Knot1 | 40 | 72 | IPR003614 | GO:0006952 | |
| Vian1g03719 | 75 | PRINTS | Purothionin signature | 30 | 45 | IPR008176 | GO:0006952 | |
| Vian1g03719 | 75 | PRINTS | Purothionin signature | 60 | 74 | IPR008176 | GO:0006952 | |
| Vian1g03719 | 75 | PANTHER | DEFENSIN-LIKE PROTEIN 1 | 6 | 75 | - | - | |
| Vian1g03719 | 75 | SUPERFAMILY | Scorpion toxin-like | 29 | 75 | IPR036574 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vian1g03719 | Vian-Chr1 | 60077439 | 60077750 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vian1g03719 | 10 | 75 | Plant Defensins Gene Families | AT2G02130 | 50.000 | 1.56e-20 | 75.5 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vian1g03719 | - | - | aew:130769154 | 100.523 |