Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03713 ATGGCCTTAGCCATGGTTCGTAGGAATGTCATCACCCACTACTCCAAGTTTGCATCTTCTTGGTCTGTGTTGTCTCGCCATTCCTCAATCCACAACCCTTCCTTGGCGTCTGTTTCTCCGTTTCATAGCCAATCTGTTGGTGGTGGTGGTGGTGGAGGATTGCCATCTTACATGCGTGGAGCTGTGTATTGGGAAACTAATAAGCCTCTGTCAATCGAGGAGTTTCACATGCCTCGCCCCAAGGCCGGTGAAGTTCTCATCAAAACCAAGGCCTGTGGAGTATGCCACTCTGATCTGCATGTTATAAAGGGTGAAATTCCGTTTTCCAGTCCTTGTGTTCTGGGGCATGAGATTACCGGTGAGGTTGTTGAACACGGACCACACTCTGACAGCAAGACAATTGAAAGGCTTCCAGTAGGGTCCCGAGTTGTTGGGTCCTTCATCATGCCTTGTGGCAACTGCTCCTACTGTTCAAAGGGCCACGATGATCTATGTGAAGCTTTCTTTGCCTATAACCGGGCAAAAGGAACCCTCTATGATGGTGAAACTAGACTATTTCTTCGAAACAGTGGAAAACCAGTATACATGTACAGTATGGGAGGGCTTGCTGAATACTGTGTTGTGCCAGCAAATGGAGTGGCTGTACTACCAGAATCATTGCCATATCCACAGTCTGCAATTCTAGGATGTGCTGTTTTTACTGCTTATGGTGCTATGGCTCACGCAGCTCAAGTGCGTCCTGGTGATTCTGTTGCTGTCATTGGAACTGGGGGTGTTGGTTCTAGTTGTTTGCAGATAGCTAGAGCCTTTGGTGCTTCGGAAATAATTGCTGTGGATGTTCAGGATGAAAAGCTACAGAAAGCAAAGACATTTGGTGCTACTCACACTGTAAATTCAGCAAAGGAAGATCCCATTGAAAAGATAAATGAAATTACTGGTGGAAAGGGTGTTGATGTAGCTGTGGAAGCCTTAGGGAAACCACAAACATTTGCTCAGTGCACACTAAGTGTGAAGGATGGTGGAAAAGCCGTAATGATTGGACTGGCACAAGCTGGTTCTTTAGGAGAGGTGGATATAAATCGGCTTGTTCGCAGAAAGATACAAGTTATTGGCTCGTATGGAGGCAGGGCGAGGCAAGATCTTCCAAAACTAATTAGATTGGCAGAAACAGGTATCTTCAATCTTGACCATGCTGTTTCTAGAACATACACCTTTGAGGATTCAGCCAAAGCATTCCAAGATCTTAATGAAGGAAAAATCATTGGTCGAGCTGTGATCGAGATAATGTAA 1290 0.4558 MALAMVRRNVITHYSKFASSWSVLSRHSSIHNPSLASVSPFHSQSVGGGGGGGLPSYMRGAVYWETNKPLSIEEFHMPRPKAGEVLIKTKACGVCHSDLHVIKGEIPFSSPCVLGHEITGEVVEHGPHSDSKTIERLPVGSRVVGSFIMPCGNCSYCSKGHDDLCEAFFAYNRAKGTLYDGETRLFLRNSGKPVYMYSMGGLAEYCVVPANGVAVLPESLPYPQSAILGCAVFTAYGAMAHAAQVRPGDSVAVIGTGGVGSSCLQIARAFGASEIIAVDVQDEKLQKAKTFGATHTVNSAKEDPIEKINEITGGKGVDVAVEALGKPQTFAQCTLSVKDGGKAVMIGLAQAGSLGEVDINRLVRRKIQVIGSYGGRARQDLPKLIRLAETGIFNLDHAVSRTYTFEDSAKAFQDLNEGKIIGRAVIEIM 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03713 429 Pfam Zinc-binding dehydrogenase 258 389 IPR013149 -
Vian1g03713 429 Gene3D - 62 418 - -
Vian1g03713 429 Gene3D - 235 372 - -
Vian1g03713 429 CDD Zn_ADH10 58 427 - -
Vian1g03713 429 FunFam Sorbitol dehydrogenase 235 373 - -
Vian1g03713 429 FunFam Alcohol dehydrogenase (Zinc) 62 249 - -
Vian1g03713 429 PANTHER NAD-DEPENDENT ALCOHOL DEHYDROGENASE 57 426 - -
Vian1g03713 429 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 220 393 IPR036291 -
Vian1g03713 429 Pfam Alcohol dehydrogenase GroES-like domain 83 213 IPR013154 -
Vian1g03713 429 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 115 129 IPR002328 GO:0008270|GO:0016491
Vian1g03713 429 SUPERFAMILY GroES-like 56 254 IPR011032 -
Vian1g03713 429 SMART PKS_ER_names_mod 65 426 IPR020843 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03713 Vian-Chr1 59967058 59970461 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03713 75 379 Monolignol Biosynthesis Gene Families AT4G37990 27.010 5.20e-19 86.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03713 - - gmx:100775182 776.933
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g03713 1 59967058 59970461 Vian1g03713 1 59967058 59970461 ECH