Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03704 ATGTTTCGCCGAAATCTTAGCAGGGTTCCTCTCAAAATATTGACGAGGTGGCTCATATTCCTTACTATCTTGAGAGTCAGTTCAGCTATCAAAGATCCTGATGTAGAAGGTGAAGCTCTGCTTGATCTTTTACATTTCCTCAATGATTCCAATAAGCAAATAACGGACTGGGACAGCCATATGGTTAGCCCGTGTTTCAGTTGGTCTCATGTCACTTGTAGAAACGGACATGTCATATCACTGGCCCTGGCTTCGGTTGGATTTGTTGGAACACTGTCTCCCTCAATTACCAAGTTGAAATATTTGGTTAGCGTGGAATTGCAGAACAACAATCTTTCAGGACCCTTGCCCGATTACATTTCCTACTTGAAAGACCTACAATATCTAAATCTTGCTGACAATAATTTTAATGGTTCTATACCAGATAAATGGGATGAACTATCCAATCTAAAGTATCTGGATCTTTCGTCTAATGGTCTTACTGGAAGGATCCCAATGCAACTCTTTTCAGTTCCAATGTTTAACTTTTCAGACACGCACCTTCAGTGTGGTCCTGGCTTCCAGCAGACTTGCACTTCTAAATCTGAAAATCCAGATTCAACCCACAAATCAAAACTGGCAAAAATTGTACGTTATGCAAGTTGTGGTGCCTTTGCACTTCTGTGTCTTGGGGCTATCCTTACATATCGACACCATCAAATGCGTGGGAACAAAAGGGACGTCTTTGTTGATGTTTCAGGTGAAGACGAGAGCAAAATCTCCCTTGGGCAATTGAGAAGATTTTCTTGGCGTGAACTACAACTTGCCACCAAAAATTTCAGTGAAGGCAATATAATTGGTCAGGGTGGTTTTGGAAAAGTGTACAAAGGAGTACTCTGTGATAACACCAAAGTAGCTGTGAAGCGCCTCGTTGATTATCACAACCCTGGTGGAGAGGCTGCATTCGAGAGAGAAGTTCAACTTATAAGTGTTGCAGTTCATAGAAACCTCTTAAGACTGATTGGCTTCTGCACAACCTCAACTGAAAGAATCCTTGTATACCCTTTCATGGAAAATCTCAGTGTAGCTTATCGACTGAGAGAATTAAAACCAGGTGAGAAAGGCTTGGACTGGCCAACAAGAAAACGTATTGCTTTTGGCACAGCTCATGGTTTGGAGTACCTACACGAGCAATGCAATCCGAAGATAATACATCGTGATCTAAAGGCTGCAAATATCCTTCTAGATGATGAATTTGAAGCTGTTCTTGGTGACTTTGGGCTAGCCAAGCTGGTTGATGCAAGGATTACTCATGTCACCACTCAAGTGCGTGGCACAATGGGTCACATTGCCCCAGAATATTTGTCCACAGGAAAATCTTCAGAGAAGACTGATGTATTTGGATATGGCATAACACTTCTTGAACTAGTTACCGGTGAGCGTGCAATAGACCTCTCTCGGCTTGAAGAGGACGAGGATGTTCTTCTCATCGATTATGTGAAAAAGCTGCTGAGAGAAAAAAGGTTGGAGGACATGGTGGATAGAAATTTGGAGAGGTATGATCCAAAGGAAGTTGAGACCATTCTTCAGGTTGCATTGCTTTGCACCCAAGGGTACCCTGAGGATCGTCCAAGCATGTCAGAGGTGGTAAAAATGCTGCAGGGAGTGGGATTGGCAGATAGATGGGCTGACTGGCAGCAACTTGAAGAGGCCAGGAATCAAGAATTCTCACTCATGACTCACCAATTTGTTTGGAATGATGAATCTACACTTGATCAAGAAGCCATACAGCTTTCCAGAGCAAGATAA 1788 0.4273 MFRRNLSRVPLKILTRWLIFLTILRVSSAIKDPDVEGEALLDLLHFLNDSNKQITDWDSHMVSPCFSWSHVTCRNGHVISLALASVGFVGTLSPSITKLKYLVSVELQNNNLSGPLPDYISYLKDLQYLNLADNNFNGSIPDKWDELSNLKYLDLSSNGLTGRIPMQLFSVPMFNFSDTHLQCGPGFQQTCTSKSENPDSTHKSKLAKIVRYASCGAFALLCLGAILTYRHHQMRGNKRDVFVDVSGEDESKISLGQLRRFSWRELQLATKNFSEGNIIGQGGFGKVYKGVLCDNTKVAVKRLVDYHNPGGEAAFEREVQLISVAVHRNLLRLIGFCTTSTERILVYPFMENLSVAYRLRELKPGEKGLDWPTRKRIAFGTAHGLEYLHEQCNPKIIHRDLKAANILLDDEFEAVLGDFGLAKLVDARITHVTTQVRGTMGHIAPEYLSTGKSSEKTDVFGYGITLLELVTGERAIDLSRLEEDEDVLLIDYVKKLLREKRLEDMVDRNLERYDPKEVETILQVALLCTQGYPEDRPSMSEVVKMLQGVGLADRWADWQQLEEARNQEFSLMTHQFVWNDESTLDQEAIQLSRAR 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03704 595 FunFam Probable LRR receptor-like serine/threonine-protein kinase At5g63710 34 193 - -
Vian1g03704 595 ProSitePatterns Serine/Threonine protein kinases active-site signature. 396 408 IPR008271 GO:0004672|GO:0006468
Vian1g03704 595 ProSiteProfiles Protein kinase domain profile. 273 556 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g03704 595 FunFam Somatic embryogenesis receptor-like kinase 1 350 566 - -
Vian1g03704 595 Pfam Leucine rich repeat 102 160 IPR001611 GO:0005515
Vian1g03704 595 ProSitePatterns Protein kinases ATP-binding region signature. 279 301 IPR017441 GO:0005524
Vian1g03704 595 SMART serkin_6 273 546 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g03704 595 Gene3D Transferase(Phosphotransferase) domain 1 350 565 - -
Vian1g03704 595 Pfam Protein kinase domain 274 544 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g03704 595 SUPERFAMILY Protein kinase-like (PK-like) 251 547 IPR011009 -
Vian1g03704 595 Gene3D Ribonuclease Inhibitor 33 203 IPR032675 -
Vian1g03704 595 SUPERFAMILY L domain-like 37 172 - -
Vian1g03704 595 Gene3D Phosphorylase Kinase; domain 1 242 349 - -
Vian1g03704 595 FunFam Somatic embryogenesis receptor kinase 1 242 349 - -
Vian1g03704 595 Pfam Leucine rich repeat N-terminal domain 35 73 IPR013210 -
Vian1g03704 595 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 18 556 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03704 Vian-Chr1 59851417 59855926 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03704 18 590 Receptor kinase-like Gene Family AT5G65240 55.721 0.0 650
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Vian1g03704 Pkinase 9.3e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03704 - - gmx:100799227 1104.35