Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03695 ATGGGTGACGGAAGTGGGAGCCGGTGGAGCAGGGCGGAGTGGGTGCAGCAGTACGATCTGTTAGGGAAAATCGGCGAAGGCACTTATGGCCTCGTTTTTCTTGCAAGAACCAAAACCCCCTCTCCCTCCAAATCCATAGCTATCAAGAAGTTCAAGCAGTCCAAGGACGGTGACGGGGTCTCCCCCACCGCCATCCGAGAAATCATGTTGTTGAGGGAGATTACGCACGAGAACGTCGTGAAGCTCGTCAATGTCCACATCAACCACGCCGACATGTCGCTCTACCTCGCCTTCGATTACGCCGAACATGATCTTTACGAAATTATTAGGCATCACAGAGACAAACTCAACCATTCTATTAATCAATACACGGTCAAGTCTTTGCTCTGGCAGTTGCTCAATGGATTAAGTTATCTGCACAGTAATTGGATGATACATCGAGATTTGAAGCCATCAAATATATTGGTTATGGGCGAAGGAGAGGAACATGGAGTTGTTAAGATTGCTGACTTTGGACTTGCAAGGATATATCAAGCTCCTCTGAAGCCGCTATCTGATAATGGGGTTGTTGTAACTATTTGGTATCGTGCACCAGAGTTGCTTCTTGGAGCAAAACATTATACCAGTGCTGTTGATATGTGGGCTGTGGGATGCATTTTTGCTGAGTTGTTGACCTTGAAGCCACTATTTCAAGGGGCAGAAGTCAAAGCTACATCAAATCCCTTTCAGCTTGACCAACTTGACAAGATATTTAAGGTTTTAGGCCATCCCACATTAGAGAAGTGGCCTTCGTTGGCAAGTCTTCCACATTGGCAACAGGACGTGCAACATATACAAGGACACAAATATGACAACACCGGTCTCTATAATGTTGTGCACCTATCTACAAAAAGTCCTGCATACGACCTCCTGTCAAAGATGCTTGAATATGATCCTCGGAAGCGTATAACAGCAGCACAAGCTTTGGAGCATGAGTATTTCAAAATCGAACCATTACCTGGACGGAATGCTCTTGTACCATGTCAACTTGGAGAGAAAATTGTAAATTATCCCACTCGTCCTGTGGACAACACAACTGATCTTGAAGGGACAACCAATCTGCCAGCTTCACAAGCGGTAACTGCAGTTTCTGGCAGCATGCCTGGTGCTCATGGATCTAATAGATCTGTTCCTCGGCCAATGAATGTGGTTGGAATGCAAAGAATGCCACCTCAACCAATGGCGGCTTATAATCTCACATCTCAGGCAGCCATGGGAGACGGAATGAATCCTGGGAATATTTCAAAGCAAAGAGGTGTTCCACAGGGCCATCCGCAACAGTTGAGAAGGAAAGAGCAAATGGGGATGCCGGGATACCCTTCACAGCAGAAGTCAAGACGAATATAA 1386 0.4618 MGDGSGSRWSRAEWVQQYDLLGKIGEGTYGLVFLARTKTPSPSKSIAIKKFKQSKDGDGVSPTAIREIMLLREITHENVVKLVNVHINHADMSLYLAFDYAEHDLYEIIRHHRDKLNHSINQYTVKSLLWQLLNGLSYLHSNWMIHRDLKPSNILVMGEGEEHGVVKIADFGLARIYQAPLKPLSDNGVVVTIWYRAPELLLGAKHYTSAVDMWAVGCIFAELLTLKPLFQGAEVKATSNPFQLDQLDKIFKVLGHPTLEKWPSLASLPHWQQDVQHIQGHKYDNTGLYNVVHLSTKSPAYDLLSKMLEYDPRKRITAAQALEHEYFKIEPLPGRNALVPCQLGEKIVNYPTRPVDNTTDLEGTTNLPASQAVTAVSGSMPGAHGSNRSVPRPMNVVGMQRMPPQPMAAYNLTSQAAMGDGMNPGNISKQRGVPQGHPQQLRRKEQMGMPGYPSQQKSRRI 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03695 461 ProSitePatterns Serine/Threonine protein kinases active-site signature. 144 156 IPR008271 GO:0004672|GO:0006468
Vian1g03695 461 PANTHER CELL DIVISION PROTEIN KINASE 16 333 - -
Vian1g03695 461 MobiDBLite consensus disorder prediction 416 461 - -
Vian1g03695 461 ProSitePatterns Protein kinases ATP-binding region signature. 24 50 IPR017441 GO:0005524
Vian1g03695 461 FunFam Putative cyclin-dependent kinase E-1 101 340 - -
Vian1g03695 461 CDD STKc_CDK8_like 17 327 - -
Vian1g03695 461 Gene3D Transferase(Phosphotransferase) domain 1 100 343 - -
Vian1g03695 461 Gene3D Phosphorylase Kinase; domain 1 5 99 - -
Vian1g03695 461 SMART serkin_6 18 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g03695 461 ProSiteProfiles Protein kinase domain profile. 18 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g03695 461 FunFam Cyclin-dependent kinase e-1 6 100 - -
Vian1g03695 461 Pfam Protein kinase domain 18 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g03695 461 SUPERFAMILY Protein kinase-like (PK-like) 13 328 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03695 Vian-Chr1 59747547 59757576 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03695 11 461 Core Cell Cycle Gene Families AT5G63610 77.074 0.0 707
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CDK8 Vian1g03695 Pkinase 9.9e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03695 K02208 - gmx:100794990 902.123