Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03693 ATGCAAGTTAATGCAGATTTTGAAATTTTAGTTTTGGACATCACTACCAAAGATTTATCTGCTTCTTGTCCTACCATGAAAAGCCTCTGCCTTGGGCCGTTCCTTGCTGTTAGTGACCCAGTTAGTTCAAGAGCCTTTGGAGGCCATATAACCAGAAAGTGCTTCCCCAAGCAAGTTCATTTCCACTCCCGTTCTTTTGTTTTCTCTTCAATCTTATGTTCTGCAACTCTATCAGTATTGCCAGAATTAGAAGAGAAGCAGATATTTGATGGAGAGAAGGCTAATTTGCTTGTTAGAGATCTCAGAAAGTGCTTTGATTCAGGCAGGACAAAGAGTTATGAATGGAGGGTTTCCCAGTTGGAGGCCATTATTAAGATGTTAAAAGAGAAAGAAAAGGAAATTACTGAAGCTCTATATAAGGATCTTGCTAAACCTCAACTTGAAGCATTTATATCTGAGGTTTCCCAGGCAAAATCCTCATGCAGTGAAGCACTTAAGGAGCTGAAACAATGGATGAAGCCTGAGAGGGTGAGTACTTCAATCACGACATTTCCATCATCAGCAGAGATTGTGCCAGAACCGCTGGGGGTTGTGTTGGTTATCTCAACATGGAACTTTCCTTTCTTGTTATCAATGGATCCGGTTATTGGAGCCATTTCTGCGGGTAATGCAGTGGTCCTTAAACCATCAGAAATTGCTCCAGCAACATCATCACTTCTTGCAAATTTGGTCGAACAATATTTAGACAACTCTGCCATCAGAGTTGTTGAAGGAGCTGTTCCTGAAACAACTGCACTCCTGGAGCAGAAATGGGATAAGATACTTTATACAGGTAGTGCTAGAGTGGGTCGGATTGTCCTGGCTGCGGCTGCAAAGCATCTTACACCAGTGATTCTAGAACTTGGAGGAAAGTGCCCTGCTGTTGTTGAATCAGATGTCAACTTACAAGTTACTGCTAGGAGGATAATAGCTGGCAAGTGGGCATGCAACAGTGGGCAAGCATGCATTGCTGTTGATTATGTCATCACAAGAAAAGAGTTTGCTCCAAAGCTGATAAGTGCCTTAAAAGAAGAATTGGAACAATTTTTTGGTAAAGATCCATTGGAATCAAAAGACATGTCACGGATTGTGTCTTCTAACCAGTTTGCGCGGCTTGTGAAACTCTTGGATGAGGATAAGGTATCTGACAAAATTGTTTTAGGAGGTCAGAGGGATGAGAAGAAATTAAAAATTTCCCCAACTATCATATTAGGTGTTCCTGAAGATGCTTTGGTAATGCAGGAGGAGATATTTGGGCCAATATTGCCAATCATCACAGTAGACAACATAGAAGATTGCTACAGTATAATCAAATCAAGGCCAAAACCTCTTGCTGCATATCTCTTCACAAACAATGAGCAGCTGAAGAAGGATTATGTGGATAAGATATCGTCAGGAGGGATACTCATCAATGACGCTGTCATCCATGTTGCAACTCGTGGTTTGCCTTTTGGAGGAGTTGAAGAGAGTGGAATGGGTTGTTACCATGGAAAATTCTCTTTTGATAGTTTCAGTCATAGGAAGTCAGTTCTCTATAGAAGTTTTGGTGCAGATTCATCCATAAGGTACCCCCCATACACACCTGAGAAGGAAAAATTATTGAAGGCCATTATCAGTGGCAATATTGTTCAAATAATTCTTGCTCTTTTTGGATGGTCTTAA 1701 0.4103 MQVNADFEILVLDITTKDLSASCPTMKSLCLGPFLAVSDPVSSRAFGGHITRKCFPKQVHFHSRSFVFSSILCSATLSVLPELEEKQIFDGEKANLLVRDLRKCFDSGRTKSYEWRVSQLEAIIKMLKEKEKEITEALYKDLAKPQLEAFISEVSQAKSSCSEALKELKQWMKPERVSTSITTFPSSAEIVPEPLGVVLVISTWNFPFLLSMDPVIGAISAGNAVVLKPSEIAPATSSLLANLVEQYLDNSAIRVVEGAVPETTALLEQKWDKILYTGSARVGRIVLAAAAKHLTPVILELGGKCPAVVESDVNLQVTARRIIAGKWACNSGQACIAVDYVITRKEFAPKLISALKEELEQFFGKDPLESKDMSRIVSSNQFARLVKLLDEDKVSDKIVLGGQRDEKKLKISPTIILGVPEDALVMQEEIFGPILPIITVDNIEDCYSIIKSRPKPLAAYLFTNNEQLKKDYVDKISSGGILINDAVIHVATRGLPFGGVEESGMGCYHGKFSFDSFSHRKSVLYRSFGADSSIRYPPYTPEKEKLLKAIISGNIVQIILALFGWS 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03693 566 FunFam Aldehyde dehydrogenase 102 306 - -
Vian1g03693 566 Coils Coil 117 137 - -
Vian1g03693 566 SUPERFAMILY ALDH-like 97 538 IPR016161 GO:0016491
Vian1g03693 566 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 102 521 IPR016162 GO:0016491
Vian1g03693 566 FunFam Aldehyde dehydrogenase 303 503 - -
Vian1g03693 566 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 303 503 IPR016163 GO:0016620
Vian1g03693 566 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 328 339 IPR016160 GO:0016491
Vian1g03693 566 PANTHER ALDEHYDE DEHYDROGENASE 93 558 IPR012394 GO:0006081
Vian1g03693 566 Pfam Aldehyde dehydrogenase family 92 523 IPR015590 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03693 Vian-Chr1 59729485 59733704 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03693 41 566 Aldehyde Dehydrogenase Gene Family AT4G34240 65.779 0.0 703
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03693 K00128 - gmx:100800699 971.844
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g03693 1 59729485 59733704 Vian1g03693 1 59729485 59733704 ECH