Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03684 ATGGCGAACAACAAGAGCTCCAAGAAACCAGTCAGTCTCAATGATAGTCACTATCGCTTCCTCCAAGAGCATTCCGCTCCCCCGAAACCCTCTTCCAAACCTTTCGATGAAGAATCGATCGAATCCTCCGCGCGAAAACAGGAACACCAAAACATTCCTCAATTCTCCGCAATCACCGACTTCGATTCTCCAATCGCCTCGGAAGAGAAACACGAACCGATCAAGGTACATGAAGCAGAAGAAGTTGTAGCTCCGTCCTACGATATTTCTACTACTGGGCAAGACTCGGACAAGAAACACGAGCCAATCATCTTTCAAGAAGAAGAACAAGAAGAAGGTTCGTCCGACGTGGTTATTTCTTCCACTAGGCAAAACACGGATGAGAAATACGAACCGACATTTTTTGAAGAAGAAGCTCCTCCCGACGTGGTTGATTTTGCCCCTAAGGAAGAAAGGACGACGAAGATGAAAGTAAAGGGGCGGCGGCGCCTATGTAAGATTGTGCATGAAGACGCTGGAAAAAGCGTGGCGGTTGATGAGTCCAAGTTTGATGAACTGATCGACCTTGATTCACCGATTCCGGTGCCCAAAAACGTCGTCCAGATCGAGGAGAGTGGGGGCAAGAATGAAATCAGGGATATTTTGACTGAACTGAACGCCAAGTTTGAGTTGCTATCGGTTGAGAGGAAGCCCAGGCCGAAGCGTGTTGAGGGTTTGGTTGCAGGTAAAGAAAGTTACGATGATGAGGGTTTAGAGTATGGGAGTGCAGGGTCTTCGTTTTCTCCGCAGCAGGAGAGCTTGGCTGAGGGTAATAAGAATGATGATGGCGACTGTATTGAGTATGATTCAGACGATTCGGTTCAAGTGATGGATAATTTTGTGCCAGAGAATGATGGTTCAATAACTTTGACTGGACCCAGGTCAACCTTTAAGTTGCCTGCTAAAATTGCGAAAATGTTGTATCCACATCAGCGGGAGGGGTTGACGTGGCTCTGGTCTTTGCATAGTCTGGGAAAAGGGGGAATCTTGGGGGATGATATGGGTTTGGGGAAAACAATGCAGATCTGTGGCTTTCTAGCTGGACTGTTTCATTCTCGTTTAATAAGACGGGCATTGGTTGTAGCTCCCAAAACATTATTGCCCCATTGGATCAAAGAATTGTCAGTAGTGGGTCTATCCGAGAAGACAAGAGAATATTTTGGAACTTCTACAAAACTTAGAGAATATGAACTTCAGTACATACTTCAGGACAAAGGAGTTCTTCTCACAACTTATGATATTGTCCGCAACAATTCTAAGTCCTTACGGGGGAGTAATTATTTAAATGACGACGAAAGTGAAGATGATGCTACATGGGACTACATGATACTCGATGAGGGACACCTTATAAAGAACCCAAGCACACAAAGGGCTAAAAGTTTGCTTGAAATACCAAGTGCTCATCGCATTATCATCAGTGGCACACCATTGCAAAATAATCTTAAGGAATTGTGGGCATTGTTCAATTTCTGTTGCCCAGAGTTGCTAGGTGACAACAAATGGTTCAAAGAAAAATTTGAAAAGCCCATACTCCGTGGAAATGACAAGCATGCTTCTGACAGGGAAAAACGTGTTGGTTCATCTGTAGCACAGGAACTAAGAGATCGGATTCAGCCTTACTTTTTAAGACGAATGAAGAGTGAGGTTTTCAGTCAAGATAATGAGAAAACAATTGCAAAACTTTCTCAAAAACAAGAGATCATTGTGTGGCTTCGATTGACCAGTGTTCAGCGGTATCTTTATGAAGCATTTTTGAAGAGTGAGATTGTTCTCTCAGCATTTGATGGCTCACCACTGGCTGCCCTTACGATTCTAAAGAAAATATGTGATCATCCACTTCTGTTGACCAAGCGGGCAGCTGAGGATGTGTTGGAAGGGATGGACTCAATGCTAAAGCCAGACGAAGCTAATGTTGCAACAAAATTGGCAATGCACATAGCCGATGTTGGTGACACAGAAAGGTTTAAAGATGAACAAGACGTGTCATGCAAAATTTCCTTCATTATGTCATTGCTGGATAATTTGATCCCAGAAGGGCATTGTGTGCTTATATTTTCTCAGACTCGCATGATGCTTAATCTTATTCAGGAATGCCTACTGTCCCAAGGTTATGACTTCTTACGAATTGATGGCACAACAAAAGTCAATGACAGACTAAAGATTGTCAATGATTTCCAAGAAGGTGTTGGAGCTCCTATATTTCTCTTGACGTCTCAGTGGTCTGTAGCCATCTTTTCTGCCAGTAGCTTTATTAATGTCGTAAGTATGGATAATCAAAGTGTGGACCGTGCATATCGAATTGGGCAAAAGAAAGATGTCATTGTATATAGACTAATGACGTGCGGAACTGTTGAAGAAAAGATCTACAGGAAACAGGTATATAAGGGAGGATTATTCAAAACTGCTACCGAGAAGAAAGAACAGATTCGGTACTTTAGCCAACAGGATCTTAGGGAGCTTTTCAGCCTTCCAAAAGAAGGATTTGATGTATCTGTTACCCAAAGGCAATTGAATGAGGAGCACGATCGTCAATATACAGTTGATGACTCTTTCAAAGCACATATAGAGTTCTTGAAGAGTAAAGGCATAGCTGGAGTTAGTCACCACAGTTTACTCTTTTCAAAGGCAGAACCGCAGGTTCGTGATGAACTTGAGGATGATGAAGTTCCAAGGAATCATGCGACTAGGTATATTGGGACTTCGAGGTCATCTTCAAATGACCATATTACTTATGGCAGCTCCGAGTTTGCAATTAATCCTAAGAATGTTACCACAAGCAAAAAAGGTTCATCTCCTAGCAGTGCTGGTAAATTGACGGAGTCAGAAATCAAGGATAAAATTAATCGGCTCTCTCAAACACTCTCAAATGCGGTTTTATGCCGTCCAATGTCTGTCAACCTGTCCCATGTGGAAGATGACATAGGCATATTATGTCAAGCTATGATTTCTAAGTTACCTGACAAGGGCGAGAAACTGCAGAAGCGGCTTGCGGAGCTGAGTTTAGAGCTGGCTGAACTGAAAAGTGAAAGAAATGTGATTGATTTGGATGATTTTACCACTGAATTTGAACAAGGGTTGAATGTATAG 3126 0.4271 MANNKSSKKPVSLNDSHYRFLQEHSAPPKPSSKPFDEESIESSARKQEHQNIPQFSAITDFDSPIASEEKHEPIKVHEAEEVVAPSYDISTTGQDSDKKHEPIIFQEEEQEEGSSDVVISSTRQNTDEKYEPTFFEEEAPPDVVDFAPKEERTTKMKVKGRRRLCKIVHEDAGKSVAVDESKFDELIDLDSPIPVPKNVVQIEESGGKNEIRDILTELNAKFELLSVERKPRPKRVEGLVAGKESYDDEGLEYGSAGSSFSPQQESLAEGNKNDDGDCIEYDSDDSVQVMDNFVPENDGSITLTGPRSTFKLPAKIAKMLYPHQREGLTWLWSLHSLGKGGILGDDMGLGKTMQICGFLAGLFHSRLIRRALVVAPKTLLPHWIKELSVVGLSEKTREYFGTSTKLREYELQYILQDKGVLLTTYDIVRNNSKSLRGSNYLNDDESEDDATWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPLQNNLKELWALFNFCCPELLGDNKWFKEKFEKPILRGNDKHASDREKRVGSSVAQELRDRIQPYFLRRMKSEVFSQDNEKTIAKLSQKQEIIVWLRLTSVQRYLYEAFLKSEIVLSAFDGSPLAALTILKKICDHPLLLTKRAAEDVLEGMDSMLKPDEANVATKLAMHIADVGDTERFKDEQDVSCKISFIMSLLDNLIPEGHCVLIFSQTRMMLNLIQECLLSQGYDFLRIDGTTKVNDRLKIVNDFQEGVGAPIFLLTSQWSVAIFSASSFINVVSMDNQSVDRAYRIGQKKDVIVYRLMTCGTVEEKIYRKQVYKGGLFKTATEKKEQIRYFSQQDLRELFSLPKEGFDVSVTQRQLNEEHDRQYTVDDSFKAHIEFLKSKGIAGVSHHSLLFSKAEPQVRDELEDDEVPRNHATRYIGTSRSSSNDHITYGSSEFAINPKNVTTSKKGSSPSSAGKLTESEIKDKINRLSQTLSNAVLCRPMSVNLSHVEDDIGILCQAMISKLPDKGEKLQKRLAELSLELAELKSERNVIDLDDFTTEFEQGLNV 1041
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03684 1041 MobiDBLite consensus disorder prediction 64 82 - -
Vian1g03684 1041 MobiDBLite consensus disorder prediction 93 107 - -
Vian1g03684 1041 MobiDBLite consensus disorder prediction 933 951 - -
Vian1g03684 1041 Pfam Helicase conserved C-terminal domain 677 748 IPR001650 -
Vian1g03684 1041 CDD SF2_C_SNF 669 792 - -
Vian1g03684 1041 Coils Coil 1002 1029 - -
Vian1g03684 1041 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 309 557 IPR027417 -
Vian1g03684 1041 MobiDBLite consensus disorder prediction 251 274 - -
Vian1g03684 1041 Gene3D - 579 867 IPR027417 -
Vian1g03684 1041 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 332 507 IPR014001 -
Vian1g03684 1041 MobiDBLite consensus disorder prediction 1 141 - -
Vian1g03684 1041 MobiDBLite consensus disorder prediction 30 45 - -
Vian1g03684 1041 MobiDBLite consensus disorder prediction 933 953 - -
Vian1g03684 1041 MobiDBLite consensus disorder prediction 46 61 - -
Vian1g03684 1041 PANTHER SNF2/RAD54 FAMILY MEMBER 86 1021 - -
Vian1g03684 1041 Gene3D - 304 578 IPR038718 -
Vian1g03684 1041 FunFam Protein CHROMATIN REMODELING 24 299 577 - -
Vian1g03684 1041 Pfam SNF2-related domain 337 627 IPR000330 GO:0005524|GO:0140658
Vian1g03684 1041 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 571 845 IPR027417 -
Vian1g03684 1041 SMART ultradead3 315 518 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03684 Vian-Chr1 59635149 59643808 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03684 675 835 RAD5 or RAD16-like Gene Family AT5G22750 28.994 2.88e-12 69.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vian1g03684 SNF2_N 8e-49 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03684 K20093 - gmx:100779283 1585.85