Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03679 ATGGAAGATGAGAGCCATAACACTTTGCCAAATGGTTTTAACTCTGCAAGCCCCAGAAGCCCTTGCTTAAAGACAACCAACAACACAACAAACACCACCTCAACCACACAAAACAACAACATCAACAATAACCATAATAACAACAATAACCACAACAAAGAACAAGACCGGTTTCTCCCCATTGCCAACGTGGGAAGAATCATGAAAAAGGTTATTCCTTCCAATGGGAAAATCTCCAAGGACGCAAAGGAAACTGTCCAAGAGTGTGTCTCTGAGTTCATCAGCTTTGTCACCGGAGAAGCCTCAGACAAATGTCAGAGGGAGAAGAGAAAGACCATCAACGGTGATGATGTGATTTGGGCCATCACAACCTTAGGGTTTGAAGATTACGTTGAACCCTTGAAAATTTACCTTCAGAAATATAAAGAGATTGAAGGAGAAAAACTTAACATTCCAAAGCAACTTCGTTCTGAGCAAAGGCTACAACAGCACCAACAAAATAACAGTAACAGTAGCCAAGACGATAATAACCAACAATTCAATGGTGCATATGCCTCCACCAATCTCATTTCTCAGCCTCCATATGTCACCTCTGATCAGAAGTTTCCGTTACCCTTTTCCCCAAACTCCATTCAGAATCACCAGATTGATTCTGTGGGACACTGGTACGAATAA 675 0.4163 MEDESHNTLPNGFNSASPRSPCLKTTNNTTNTTSTTQNNNINNNHNNNNNHNKEQDRFLPIANVGRIMKKVIPSNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDVIWAITTLGFEDYVEPLKIYLQKYKEIEGEKLNIPKQLRSEQRLQQHQQNNSNSSQDDNNQQFNGAYASTNLISQPPYVTSDQKFPLPFSPNSIQNHQIDSVGHWYE 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03679 224 ProSitePatterns NF-YB/HAP3 subunit signature. 89 105 IPR003956 GO:0005634|GO:0006355|GO:0043565
Vian1g03679 224 Gene3D Histone, subunit A 43 183 IPR009072 GO:0046982
Vian1g03679 224 MobiDBLite consensus disorder prediction 1 54 - -
Vian1g03679 224 MobiDBLite consensus disorder prediction 7 54 - -
Vian1g03679 224 SUPERFAMILY Histone-fold 55 174 IPR009072 GO:0046982
Vian1g03679 224 MobiDBLite consensus disorder prediction 158 180 - -
Vian1g03679 224 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 32 178 IPR027113 GO:0001228|GO:0006355|GO:0016602
Vian1g03679 224 FunFam Nuclear transcription factor Y subunit B-3 47 173 - -
Vian1g03679 224 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 58 122 IPR003958 -
Vian1g03679 224 PRINTS CCAAT-binding transcription factor subunit A signature 105 123 - -
Vian1g03679 224 PRINTS CCAAT-binding transcription factor subunit A signature 124 142 - -
Vian1g03679 224 PRINTS CCAAT-binding transcription factor subunit A signature 86 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03679 Vian-Chr1 59584338 59585012 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03679 53 222 CCAAT-HAP3 Transcription Factor Family AT2G13570 64.835 3.62e-68 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Vian1g03679 CBFD_NFYB_HMF 4.8e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03679 K08065 - gmx:100778216 315.079