Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03669 ATGAACGAGTCTAAAAACATCATTCCTCCCCTATTCAGATGTCCCATAAGTTTAGACTTGTTGGAAGATCCTGTAACCTTGTGCACAGGCCAAACCTATGACAGGTCAAACATAGAAAAATGGCTTGCTGCCGGTAACCTCACTTGTCCGGTCACAATGCAAAAGCTTCACGATCCATCCATTGTTCCCAACCACACTCTTCGCCACTTGATCGATCAGTGGCTTCAACTGGGTCCCTTATTCGACCCTGCCAACCCTGAAACTTCAACTATTGAATCCTTAGCTTATCTGAAGCGTACCCTTGAATCCCATGAAAGCAGCTTAAAAACCAAGCTCCAAGCACTCACCAAAATCCGTCTTTTATCTGATGAGTATTGCTCCTTTAACAAATCATGTTTCCTCCAATTGAACTTCTTGCCACTGCTTCTTGAACTAGTTTTTGGAACTCAAGTATCAATAGATCACATGGACTTCATAGAGTTGGCACTTTGTTGCATTCAGAAATTGCTGCCACTCGGTAGTTTGGAGCCTCTAAATATGATCAAAGATGGGTCTAAATTAGCCATGTTTGTGCTACTAATTGAAAAGGGTACTAACTCAGTAAAGACTAGTTTGTGCCGTGTTATAGAGTCAGCATCATGGTCATCTGAGACAGAAGATTTGTGCTATATTCTTGGAAATTGTCCCAAACTAGTACACGAGATTGTTGAAGTTGTTAACCAAAATTATGAAGTTTCTGGGGATGCAATTAAAGCCATGTCAGCACTGTGTTCCTTGCAATCCAATAGAGAGAGTTTGGTGAGAGGAAGAGCAATAGAAGGTATGATGAGATACATCTCATCAGAAAGAAGAGAGCTGACCCCACTGGCAGTGAGAACAGTTGAGAAACTTATGGGGCTGGAAAGTGCTAAAGTGGCATTGGTGAACCACCCTAATGGTGTTGTGACTTTGGTTAATATGGTTTTCAAGGTATCTGATCAAGAATGCAGTGAGAGTGCTGTTGAGGTGCTTTTAGTTGTTTGTGGTGAATTTGAGCGTGCAAGACAGACAGCCATTGAAAGTGGAGTTTTGACTAGGTTGTTGTTGCTCCTGCAGAGTCAGAGTAGTAACACAACAAAATCAAAGGCAAGAATGCTACTCAAATTGCTAAGATCAGAGCCAAAGCAGAAATAG 1173 0.4177 MNESKNIIPPLFRCPISLDLLEDPVTLCTGQTYDRSNIEKWLAAGNLTCPVTMQKLHDPSIVPNHTLRHLIDQWLQLGPLFDPANPETSTIESLAYLKRTLESHESSLKTKLQALTKIRLLSDEYCSFNKSCFLQLNFLPLLLELVFGTQVSIDHMDFIELALCCIQKLLPLGSLEPLNMIKDGSKLAMFVLLIEKGTNSVKTSLCRVIESASWSSETEDLCYILGNCPKLVHEIVEVVNQNYEVSGDAIKAMSALCSLQSNRESLVRGRAIEGMMRYISSERRELTPLAVRTVEKLMGLESAKVALVNHPNGVVTLVNMVFKVSDQECSESAVEVLLVVCGEFERARQTAIESGVLTRLLLLLQSQSSNTTKSKARMLLKLLRSEPKQK 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03669 390 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 8 78 IPR013083 -
Vian1g03669 390 SUPERFAMILY RING/U-box 8 76 - -
Vian1g03669 390 Pfam U-box domain 8 76 IPR003613 GO:0004842|GO:0016567
Vian1g03669 390 CDD RING-Ubox_PUB 9 56 IPR045210 -
Vian1g03669 390 PANTHER WDSAM1 PROTEIN 8 386 IPR045185 GO:0061630
Vian1g03669 390 FunFam RING-type E3 ubiquitin transferase 8 79 - -
Vian1g03669 390 ProSiteProfiles U-box domain profile. 7 81 IPR003613 GO:0004842|GO:0016567
Vian1g03669 390 Gene3D - 190 390 IPR011989 -
Vian1g03669 390 SUPERFAMILY ARM repeat 95 387 IPR016024 -
Vian1g03669 390 SMART Ubox_2 11 74 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03669 Vian-Chr1 59492180 59493352 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03669 8 367 U-box Gene Family AT3G19380 29.443 1.72e-39 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03669 - - vum:124836871 733.791
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g03669 1 59492180 59493352 Vian1g03669 1 59492180 59493352 ECH