Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03654 ATGCATGTGCCAGGGAATTCTGAGGCTTTGGAGATTGAGATGAGCGGAACCGGCAGAAACACCTCTTCAAAGTTGGATTCAGGAGATGGACCTGAATTTGCATCTTATGGTACTACTAGTAGCAACAATTCAAACTCTTCCTATTTGGAAAGAAACGATAACTTAAATCCAAGAATGGGATTTTCAAACGAGGAATCTTTTTCTGGAGGAAGGTGTTCAAATAAGGATGGCATTGTTGTGAGTAAAGATGACAGAGTTTCAGATGCGCAAAACACTGATGGAAGTAACAAAATGGAATTGTCACCTGTAAATGAAGATTTAAAAAATAAGTACAGTCAATCCCCAAAAACTGGTTGCAGTAGGTCAGACAGAAGTAGTAGCCCAAGCCCAAATAGTAGCCCAAGCCGGAGCAGGAGCAGGAGCCCTCGTAATTTTAGGTGGGATTCAAGAACCAGTGATAGATGTGGAATGAGAGCAGCATGTAGATATTTTCCTTATGGGAAATGCAGAAGAGGAAGTAAATGTCTCTTCCTTCACGGTGACAATAAAAAAATTGATGACAGCAGGGTAAGTTCACGCAGGCAAGATGGATCTCTCTTATATTCTAGTCCAAGTGGAAGATCTAAAGGAACTTGTATAAACTATGCAAATGGAAGGTGTAGAATGGGAGAATCATGCAAGTATATGCATCATGAAAATTCTAGCAAGTTCAATAAAACTTCTATGGATGAATCGACTGGGGAAATGGAAATTGATAGAAGGTGCAGAGGGAGTTCTTTCGAAGAAGGTGGTAGAAACCAGAGAAGTGACATTCCTTGCAAATTTTATCCATTTGGGAATTGTCGATATGGTAAAGATTGTAGATTTTCTCATGATAGGCAAGCAAGTGGGAGCCCAAGTAGAGGCTTCAAGGATGACTTGTTAAGGAGCAGCGATGGAGATCAGGCTTTGGATAGGCCAGAATCAAGTGAAGTTAGTCTCCATGGAAAGCTAATGGATGATGGAGAGGATTTAGATGGTAGTGTGGCTGGTGCAGATAACAAAAAAGGAATTATGGTTGACCCAGAACCTGGATTTAATACTTTGCCCGTTGGTGATGAACGGGGCCATAGCTTAGACAAGAACACAGTGCATGGTGAATCAACATTTTCAAGTGAAGTGAAGGAGGCCAAAAGTGATAGTTCCAACGTTCACACTTGTCAGTCAGTAGGAAATGAAAAAATGTCTCATAATTGGAATTATGGTGTGACATCTCCCATCCCTATTAAAGAAGAGCATGAGCAGAGTAAGCAACAAGTTACTCCAGAACAAGTAATTCATCAGAATGTAAATGTTTCGCATTCTTCAAGCTGTGAGGAAGTTGGACAAAGTCAATTAGCACCTTCCACTGTTCCTCCAAGTGTGAGAACTATTGAAAGTGTGCAGAACCAGGAAGTGTTTGCTGAGAAAAAACAGACAAGTGGGGCAAATATGGATGCAAATATACCACAAGTTGGTTCAGGTAATGCTCCAATTGAAAACGTGACAAGGGAAGAGCGACTAGCTCAACTTACTAATCTTTCAGTCTCTCTGTTACAAATCCTGGGAGCCATTCTGCATCTCCCACAAATTTTTGCTCCTTCTGTTTCTTTAGATGCAAAGAGCACTCCCTTCCAAAGCAAAACTGAAGAGTCAGGTAACCCTGTTTCCATAACATCCACCAAACCAGGTCCTGCTGTTAGACTCCTAAAGCCGCGAGATCCAAGACGTAAGTTTAGAGAGTCGATGATTGTTAATGAAAAAAAGGTGGTCCCCACCATTTCTCCAAGTCAAAATATCACAGAAGATACAGCAGAAATTCCATCATTGTTATCTGATTCACAACAACACTTTGATGAGTCTAAAAAGTCTGCCTTTTCAGAAGAACAGCTTGTCAAGAGTGAACATTCAATTGAGTTGCAGAAAGGTAAAAATGTTGAGGATAGTAACGAGAAAAACAAAATGGTAGCTGAAGGAAAGCCAAATTCTTCTACATGTGAACCTGAGGACGCCAAGACAGTGAAGGATGTGAAAGGAATTGATGCATTTAAATTTGAATTGGTTGAGTTCGTTAAGGAGCTTTTAGATCCAACATGGAAATGTGGAAAAATAAAAAAAGAAGATTATAAAGCAATTGTGAAGAAAGTTGCTGACAAAGTTACTGATACAGTGCAGCCGCCATATATTCCTCAGACAAAAGAGCAAATTGACCGTTATTTATCAATATCAAAAACAAAGATTGACAAACTTGTACAGGGTAAAGCTTTGGGTGGCCAGTGTTATTAG 2304 0.4006 MHVPGNSEALEIEMSGTGRNTSSKLDSGDGPEFASYGTTSSNNSNSSYLERNDNLNPRMGFSNEESFSGGRCSNKDGIVVSKDDRVSDAQNTDGSNKMELSPVNEDLKNKYSQSPKTGCSRSDRSSSPSPNSSPSRSRSRSPRNFRWDSRTSDRCGMRAACRYFPYGKCRRGSKCLFLHGDNKKIDDSRVSSRRQDGSLLYSSPSGRSKGTCINYANGRCRMGESCKYMHHENSSKFNKTSMDESTGEMEIDRRCRGSSFEEGGRNQRSDIPCKFYPFGNCRYGKDCRFSHDRQASGSPSRGFKDDLLRSSDGDQALDRPESSEVSLHGKLMDDGEDLDGSVAGADNKKGIMVDPEPGFNTLPVGDERGHSLDKNTVHGESTFSSEVKEAKSDSSNVHTCQSVGNEKMSHNWNYGVTSPIPIKEEHEQSKQQVTPEQVIHQNVNVSHSSSCEEVGQSQLAPSTVPPSVRTIESVQNQEVFAEKKQTSGANMDANIPQVGSGNAPIENVTREERLAQLTNLSVSLLQILGAILHLPQIFAPSVSLDAKSTPFQSKTEESGNPVSITSTKPGPAVRLLKPRDPRRKFRESMIVNEKKVVPTISPSQNITEDTAEIPSLLSDSQQHFDESKKSAFSEEQLVKSEHSIELQKGKNVEDSNEKNKMVAEGKPNSSTCEPEDAKTVKDVKGIDAFKFELVEFVKELLDPTWKCGKIKKEDYKAIVKKVADKVTDTVQPPYIPQTKEQIDRYLSISKTKIDKLVQGKALGGQCY 767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03654 767 MobiDBLite consensus disorder prediction 106 140 - -
Vian1g03654 767 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 14 760 - -
Vian1g03654 767 SUPERFAMILY CCCH zinc finger 268 292 IPR036855 GO:0046872
Vian1g03654 767 Pfam RNA-binding, Nab2-type zinc finger 160 180 - -
Vian1g03654 767 Pfam RNA-binding, Nab2-type zinc finger 272 291 - -
Vian1g03654 767 Pfam RNA-binding, Nab2-type zinc finger 212 230 - -
Vian1g03654 767 MobiDBLite consensus disorder prediction 237 263 - -
Vian1g03654 767 ProSiteProfiles Zinc finger C3H1-type profile. 160 182 IPR000571 GO:0046872
Vian1g03654 767 SMART c3hfinal6 207 232 IPR000571 GO:0046872
Vian1g03654 767 SMART c3hfinal6 156 181 IPR000571 GO:0046872
Vian1g03654 767 SMART c3hfinal6 267 293 IPR000571 GO:0046872
Vian1g03654 767 SUPERFAMILY CCCH zinc finger 207 231 IPR036855 GO:0046872
Vian1g03654 767 MobiDBLite consensus disorder prediction 1 149 - -
Vian1g03654 767 MobiDBLite consensus disorder prediction 624 661 - -
Vian1g03654 767 MobiDBLite consensus disorder prediction 13 70 - -
Vian1g03654 767 Gene3D - 154 238 - -
Vian1g03654 767 MobiDBLite consensus disorder prediction 237 266 - -
Vian1g03654 767 ProSiteProfiles Zinc finger C3H1-type profile. 267 294 IPR000571 GO:0046872
Vian1g03654 767 MobiDBLite consensus disorder prediction 550 571 - -
Vian1g03654 767 MobiDBLite consensus disorder prediction 624 676 - -
Vian1g03654 767 Gene3D - 262 305 - -
Vian1g03654 767 ProSiteProfiles Zinc finger C3H1-type profile. 206 233 IPR000571 GO:0046872
Vian1g03654 767 MobiDBLite consensus disorder prediction 305 343 - -
Vian1g03654 767 MobiDBLite consensus disorder prediction 550 567 - -
Vian1g03654 767 MobiDBLite consensus disorder prediction 291 354 - -
Vian1g03654 767 MobiDBLite consensus disorder prediction 483 503 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03654 Vian-Chr1 59299365 59304671 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vian1g03654 zf-CCCH_2 0.0014 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03654 - K22909 var:108339337 1450.65