Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03646 ATGCTGGGCTCTGATGATGGAGATATTGATGTGTTCTTTGACTCACTGGATAGTTTGTCAGCACAAGATTCTGTTCTAGGCAAAGAAGAGTTTGGCTCTGAAAGGTGTGGTTGTGATTATGGTGACATTTGGGTGAAGGAGCCTGTTAGTGTGAAGGAGAGGAGGGAACGTTTTCTGCAGGATTTGGGTTTAGACGACGCGTCTTCATCCAAGGTTTGTTATCAAGAGAGAATGAACTTTGATGACTCATCTATCAGTTTGGGATTTGAGAGGATCAGGGAGTGCAGTGGAGCAACCTCAAATGCTTCAATTTTGCATAACGATCAGGTATCTGAGAAGGTTCTCTATGGAGGCAAAGCAGCTTCTGAAGCAAAAATCTCAGTGGATGAAGTGAAAGGGTGTCCCCAAGGTGAAGCAGATGCAAACTTTGAAGGAAAAGAGCATGACTTCCCTTCTACAAATCAGGAACACAGAGAAGCTGATTCGCAAGAATTTCAGGATTTTGATATGGGTAAAAGGAAAAGAAAAAACTGGTGGAAACGCTTTGTGAACGAGAGGAAAGGGGGTGAAGGAAATGTTAGATCAAAGTTTAATGCAGGGGCAAACAAAACTCGAAGAATAAAGGTAAGGCAGAATAAAAAGAGGTGGCTAGAGTTCAGTGGCCTATTCAATGGACAAGAGGTTAGAGCTCACCAAGGTGTAATCTGGACCATGAAATTTAGTCCCTGTGGACAGTATTTAGCGAGTGGAGGTGAAGATGGTGTTGTTCGTATATGGCGTGTTACATCTCTGGATAAATCCAGTATTTGTTTCACCTCAAAAGACAGCACTTCTAATAGCAGAGTGGAACGTAAAAACACTTCTCCTAAGAAGAAAAACTCATACCAACCCTTCATTTTCCTTCCAAATAGTATTTTTCAAATTGAGGAATCACCACTGCAAGAATTTTTTGGTCATTCCAGTGATGTCTTGGATTTGGCTTGGTCTAATTCAGATATTCTCCTTTCATCTTCTATGGATAAAACTGTTCGGTTGTGGCAAATTGATTGTAATCAATGTCTAAGTGTTTTCCATCACAATGACTATGTGACATGCATTCAATTCAACCCTGTTGATGAAAATTACTTCATTAGTGGGTCCATTGATGGTAAGGTTCGAATATGGGGGATACGTGAAGAGCGAGTCATTGACTGGGCAAATATACGAGATGTCATAAGTGCTATAAGTTACCAGGAAGATGGGAAAGGATTTGTAGTTGGTTCTGTTACAGGCACTTGTCGTTTTTATGTTGCTTCAGGAAAATATTTCCAGCTTGAGGCGCAGATAGATGTACATGGTAAGAAGAAAGCATCAGGCAACAAGATTACTGGCATTCAGTTCTCCCAAAAAAGTACCAAGAGAATTATGATCACAACAGAAGATTCCAAAATTCATATTTATGATGGCATTGAGCTTGTTCAGAAATACAAAGGTCTTCCCAAGTCAGGGAGTCAAATGTCGGGTTCATTTACATCAAGTGGAAAACATATAATTTCAGTTGGAGAAGACTCCCATGTTTACATATGGAACTTGGATGACTTGGGAAATGCTTCTTCTAAACACACAAAATCTGAACGTTCCTGTGAGTACTTTTTTTCCAAGGGTGTTACTGTTGCAATACCTTGGTCAGATGTGAAAGCATATCAAAGGGGTTCTAGCAGTAACTTTTCCCACCATTCTTCAGAAATGCAAAGCCAATCAGAGCTTGCCCCCCATGAGACTAGAGATGCAGAGCGTTTTTCTCTTGGTAACTGGTTTGCCATTGATGGCACATGCCGAGGTTCTATGACATGGCCTGAGGAGAAACTTCCCAGCTGGGATTTACCTATAGCAGAAGACGAATATGATGAGCAGCAGTTATGTCAGAAAAATACTTGCCAAGACAGAATTGTATCAGAAACATGGGGCCTATCGATTGTGGTGGCTGGTTGTGATGGAACTATCAAGACATTCCACAACTTTGGATTACCCATTAGGCTCTAA 2022 0.4095 MLGSDDGDIDVFFDSLDSLSAQDSVLGKEEFGSERCGCDYGDIWVKEPVSVKERRERFLQDLGLDDASSSKVCYQERMNFDDSSISLGFERIRECSGATSNASILHNDQVSEKVLYGGKAASEAKISVDEVKGCPQGEADANFEGKEHDFPSTNQEHREADSQEFQDFDMGKRKRKNWWKRFVNERKGGEGNVRSKFNAGANKTRRIKVRQNKKRWLEFSGLFNGQEVRAHQGVIWTMKFSPCGQYLASGGEDGVVRIWRVTSLDKSSICFTSKDSTSNSRVERKNTSPKKKNSYQPFIFLPNSIFQIEESPLQEFFGHSSDVLDLAWSNSDILLSSSMDKTVRLWQIDCNQCLSVFHHNDYVTCIQFNPVDENYFISGSIDGKVRIWGIREERVIDWANIRDVISAISYQEDGKGFVVGSVTGTCRFYVASGKYFQLEAQIDVHGKKKASGNKITGIQFSQKSTKRIMITTEDSKIHIYDGIELVQKYKGLPKSGSQMSGSFTSSGKHIISVGEDSHVYIWNLDDLGNASSKHTKSERSCEYFFSKGVTVAIPWSDVKAYQRGSSSNFSHHSSEMQSQSELAPHETRDAERFSLGNWFAIDGTCRGSMTWPEEKLPSWDLPIAEDEYDEQQLCQKNTCQDRIVSETWGLSIVVAGCDGTIKTFHNFGLPIRL 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03646 673 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 228 263 - -
Vian1g03646 673 ProSiteProfiles Trp-Asp (WD) repeats profile. 316 356 IPR001680 GO:0005515
Vian1g03646 673 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 316 349 - -
Vian1g03646 673 MobiDBLite consensus disorder prediction 139 163 - -
Vian1g03646 673 FunFam WD repeat-containing protein 44 212 555 - -
Vian1g03646 673 ProSiteProfiles Trp-Asp (WD) repeats profile. 356 398 IPR001680 GO:0005515
Vian1g03646 673 PRINTS G protein beta WD-40 repeat signature 376 390 IPR020472 -
Vian1g03646 673 PRINTS G protein beta WD-40 repeat signature 247 261 IPR020472 -
Vian1g03646 673 PRINTS G protein beta WD-40 repeat signature 334 348 IPR020472 -
Vian1g03646 673 ProSiteProfiles Trp-Asp (WD) repeats profile. 228 269 IPR001680 GO:0005515
Vian1g03646 673 SUPERFAMILY WD40 repeat-like 227 663 IPR036322 GO:0005515
Vian1g03646 673 Pfam WD domain, G-beta repeat 227 259 IPR001680 GO:0005515
Vian1g03646 673 Pfam WD domain, G-beta repeat 311 346 IPR001680 GO:0005515
Vian1g03646 673 Pfam WD domain, G-beta repeat 352 388 IPR001680 GO:0005515
Vian1g03646 673 MobiDBLite consensus disorder prediction 141 163 - -
Vian1g03646 673 Gene3D - 224 557 IPR015943 GO:0005515
Vian1g03646 673 PANTHER WD REPEAT DOMAIN 44 8 670 IPR040324 -
Vian1g03646 673 SMART WD40_4 350 389 IPR001680 GO:0005515
Vian1g03646 673 SMART WD40_4 309 347 IPR001680 GO:0005515
Vian1g03646 673 SMART WD40_4 482 523 IPR001680 GO:0005515
Vian1g03646 673 SMART WD40_4 441 481 IPR001680 GO:0005515
Vian1g03646 673 SMART WD40_4 221 260 IPR001680 GO:0005515
Vian1g03646 673 SMART WD40_4 391 430 IPR001680 GO:0005515
Vian1g03646 673 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 356 391 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03646 Vian-Chr1 59222457 59225547 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03646 K20241 - gmx:100819135 1117.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g03646 1 59222457 59225547 Vian1g03646 1 59222457 59225547 ECH
Vian1g03646 1 59222457 59225547 Vian4g01342 4 27258306 27261324 PCT