Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03645 ATGGTTAGGGACGATCTCTACATCACCGTTCCCAGCTTCTTCCGCTGCCCCATATCCCTCGACGTCATGAAATCCCCCGTCAGTCTCTCCACCGGCGTTACCTACGACCGCTCCAGCATCCAGCGCTGGCTCGACAACGGCAACAACACCTGTCCCGCCACCATGCAGGTTCTCCAAACCAAGGAATTTGTTCCTAATCGAACCTTACAGAGGCTCATCCAGATCTGGTCAGACTCCCTCCACCACCCACTCCACTCCGCTCACTCCCCCACCTCCACCCCCTCCCAATCCCTCCCCTCCAAGGACCAAATCCTTCTCGCTATCTCCGACTTGCAGACTCGCGCCGACAACCGCTTCGACTCGCTCGCCAAAATCTCTCGCTTCGCTCAAGATTCCGAAGAGAACCGCGATTTTCTCGTCAAAATGGAATGCTTCGTGCCTCTGCTCGTTGGCTTCCTCCACAATGTCAATGGCGGCGTCGAGTTCCTCGAACAGGTCGTTATGGCGTTGGATTTGATTATCGGAAAAATGGAAGATCGTGAGGGGCTGAAAAACTTGATACTGAAGGCGCAGGGCGAGGCAGAAAAACAGAGTCTGGATTCTCTGCTCGTCGCTCTCCGACGAGGGAACCATGCCGCACAGATAGCATCGGTTAGGGTTTTGACGTCGGTCGCCGTGGACATGGAATCGAAGCTTTTGATAGCGGAGAAGGAAGGTTTAGTGTCCGAATTGCTGAAACTAATCACGCCGGAGAAAGATCCAGATCTAATCGAGAACTGTTTGTCGTGCCTGGTGGCGATTTCGTCTCCGAGACGGAGCAAGATGAAGCTGGTGTGTCTGGGAGCGGTTAAGGTGTTGTCGAAGCTTCTCTGCGCTTCGAACGTGAGCGTGTCGGTGACGGAGAAGGTTCTGAAGCTGGTGGAAACGGTGTCGTCTACGAAGGAAGGGAGGTTGGAGATATGCGAGGATTCAGCGTGCGTGGCGGCGATAGTGAACAAAGTGCTGAAAGTGTCGAGCGTGGCAACGGAACACGCCGTTACGACGCTGTGGAGCGTGTGTTATCTGTTTCGGGATGAGACGGCGCAAGAGGCCGTTACGAAGGCTAACGGCTTGACCAAGATTCTGCTTCTGATGCAGAGTAATTGCTCGCCGCAAGTGCGCCAAATGTCTGCGGATTTGCTCAAGATATTCCGGGTTAATTCCAAGTCGTGTCTTTCATCGTACGACACCAAAACCACTCATATTATGCCCTTTTGA 1257 0.537 MVRDDLYITVPSFFRCPISLDVMKSPVSLSTGVTYDRSSIQRWLDNGNNTCPATMQVLQTKEFVPNRTLQRLIQIWSDSLHHPLHSAHSPTSTPSQSLPSKDQILLAISDLQTRADNRFDSLAKISRFAQDSEENRDFLVKMECFVPLLVGFLHNVNGGVEFLEQVVMALDLIIGKMEDREGLKNLILKAQGEAEKQSLDSLLVALRRGNHAAQIASVRVLTSVAVDMESKLLIAEKEGLVSELLKLITPEKDPDLIENCLSCLVAISSPRRSKMKLVCLGAVKVLSKLLCASNVSVSVTEKVLKLVETVSSTKEGRLEICEDSACVAAIVNKVLKVSSVATEHAVTTLWSVCYLFRDETAQEAVTKANGLTKILLLMQSNCSPQVRQMSADLLKIFRVNSKSCLSSYDTKTTHIMPF 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03645 418 ProSiteProfiles U-box domain profile. 9 83 IPR003613 GO:0004842|GO:0016567
Vian1g03645 418 SUPERFAMILY RING/U-box 5 78 - -
Vian1g03645 418 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 87 IPR013083 -
Vian1g03645 418 PANTHER WDSAM1 PROTEIN 9 406 IPR045185 GO:0061630
Vian1g03645 418 Pfam U-box domain 10 77 IPR003613 GO:0004842|GO:0016567
Vian1g03645 418 SMART Ubox_2 13 76 IPR003613 GO:0004842|GO:0016567
Vian1g03645 418 CDD RING-Ubox_PUB 11 63 IPR045210 -
Vian1g03645 418 Gene3D - 107 407 IPR011989 -
Vian1g03645 418 FunFam RING-type E3 ubiquitin transferase 2 82 - -
Vian1g03645 418 SMART arm_5 132 175 IPR000225 GO:0005515
Vian1g03645 418 SMART arm_5 227 269 IPR000225 GO:0005515
Vian1g03645 418 SMART arm_5 357 399 IPR000225 GO:0005515
Vian1g03645 418 SMART arm_5 270 312 IPR000225 GO:0005515
Vian1g03645 418 SUPERFAMILY ARM repeat 116 400 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03645 Vian-Chr1 59193235 59194491 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03645 1 418 U-box Gene Family AT5G64660 52.914 7.25e-143 412
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03645 - - vra:106764800 752.666
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g03645 1 59193235 59194491 Vian1g03645 1 59193235 59194491 ECH
Vian4g01098 4 17717721 17718947 Vian1g03645 1 59193235 59194491 ECH
Vian1g03645 1 59193235 59194491 Vian4g01098 4 17717721 17718947 PCT