Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vian1g03645 | ATGGTTAGGGACGATCTCTACATCACCGTTCCCAGCTTCTTCCGCTGCCCCATATCCCTCGACGTCATGAAATCCCCCGTCAGTCTCTCCACCGGCGTTACCTACGACCGCTCCAGCATCCAGCGCTGGCTCGACAACGGCAACAACACCTGTCCCGCCACCATGCAGGTTCTCCAAACCAAGGAATTTGTTCCTAATCGAACCTTACAGAGGCTCATCCAGATCTGGTCAGACTCCCTCCACCACCCACTCCACTCCGCTCACTCCCCCACCTCCACCCCCTCCCAATCCCTCCCCTCCAAGGACCAAATCCTTCTCGCTATCTCCGACTTGCAGACTCGCGCCGACAACCGCTTCGACTCGCTCGCCAAAATCTCTCGCTTCGCTCAAGATTCCGAAGAGAACCGCGATTTTCTCGTCAAAATGGAATGCTTCGTGCCTCTGCTCGTTGGCTTCCTCCACAATGTCAATGGCGGCGTCGAGTTCCTCGAACAGGTCGTTATGGCGTTGGATTTGATTATCGGAAAAATGGAAGATCGTGAGGGGCTGAAAAACTTGATACTGAAGGCGCAGGGCGAGGCAGAAAAACAGAGTCTGGATTCTCTGCTCGTCGCTCTCCGACGAGGGAACCATGCCGCACAGATAGCATCGGTTAGGGTTTTGACGTCGGTCGCCGTGGACATGGAATCGAAGCTTTTGATAGCGGAGAAGGAAGGTTTAGTGTCCGAATTGCTGAAACTAATCACGCCGGAGAAAGATCCAGATCTAATCGAGAACTGTTTGTCGTGCCTGGTGGCGATTTCGTCTCCGAGACGGAGCAAGATGAAGCTGGTGTGTCTGGGAGCGGTTAAGGTGTTGTCGAAGCTTCTCTGCGCTTCGAACGTGAGCGTGTCGGTGACGGAGAAGGTTCTGAAGCTGGTGGAAACGGTGTCGTCTACGAAGGAAGGGAGGTTGGAGATATGCGAGGATTCAGCGTGCGTGGCGGCGATAGTGAACAAAGTGCTGAAAGTGTCGAGCGTGGCAACGGAACACGCCGTTACGACGCTGTGGAGCGTGTGTTATCTGTTTCGGGATGAGACGGCGCAAGAGGCCGTTACGAAGGCTAACGGCTTGACCAAGATTCTGCTTCTGATGCAGAGTAATTGCTCGCCGCAAGTGCGCCAAATGTCTGCGGATTTGCTCAAGATATTCCGGGTTAATTCCAAGTCGTGTCTTTCATCGTACGACACCAAAACCACTCATATTATGCCCTTTTGA | 1257 | 0.537 | MVRDDLYITVPSFFRCPISLDVMKSPVSLSTGVTYDRSSIQRWLDNGNNTCPATMQVLQTKEFVPNRTLQRLIQIWSDSLHHPLHSAHSPTSTPSQSLPSKDQILLAISDLQTRADNRFDSLAKISRFAQDSEENRDFLVKMECFVPLLVGFLHNVNGGVEFLEQVVMALDLIIGKMEDREGLKNLILKAQGEAEKQSLDSLLVALRRGNHAAQIASVRVLTSVAVDMESKLLIAEKEGLVSELLKLITPEKDPDLIENCLSCLVAISSPRRSKMKLVCLGAVKVLSKLLCASNVSVSVTEKVLKLVETVSSTKEGRLEICEDSACVAAIVNKVLKVSSVATEHAVTTLWSVCYLFRDETAQEAVTKANGLTKILLLMQSNCSPQVRQMSADLLKIFRVNSKSCLSSYDTKTTHIMPF | 418 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vian1g03645 | 418 | ProSiteProfiles | U-box domain profile. | 9 | 83 | IPR003613 | GO:0004842|GO:0016567 | |
Vian1g03645 | 418 | SUPERFAMILY | RING/U-box | 5 | 78 | - | - | |
Vian1g03645 | 418 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 3 | 87 | IPR013083 | - | |
Vian1g03645 | 418 | PANTHER | WDSAM1 PROTEIN | 9 | 406 | IPR045185 | GO:0061630 | |
Vian1g03645 | 418 | Pfam | U-box domain | 10 | 77 | IPR003613 | GO:0004842|GO:0016567 | |
Vian1g03645 | 418 | SMART | Ubox_2 | 13 | 76 | IPR003613 | GO:0004842|GO:0016567 | |
Vian1g03645 | 418 | CDD | RING-Ubox_PUB | 11 | 63 | IPR045210 | - | |
Vian1g03645 | 418 | Gene3D | - | 107 | 407 | IPR011989 | - | |
Vian1g03645 | 418 | FunFam | RING-type E3 ubiquitin transferase | 2 | 82 | - | - | |
Vian1g03645 | 418 | SMART | arm_5 | 132 | 175 | IPR000225 | GO:0005515 | |
Vian1g03645 | 418 | SMART | arm_5 | 227 | 269 | IPR000225 | GO:0005515 | |
Vian1g03645 | 418 | SMART | arm_5 | 357 | 399 | IPR000225 | GO:0005515 | |
Vian1g03645 | 418 | SMART | arm_5 | 270 | 312 | IPR000225 | GO:0005515 | |
Vian1g03645 | 418 | SUPERFAMILY | ARM repeat | 116 | 400 | IPR016024 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vian1g03645 | Vian-Chr1 | 59193235 | 59194491 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vian1g03645 | 1 | 418 | U-box Gene Family | AT5G64660 | 52.914 | 7.25e-143 | 412 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vian1g03645 | - | - | vra:106764800 | 752.666 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Vian1g03645 | 1 | 59193235 | 59194491 | Vian1g03645 | 1 | 59193235 | 59194491 | ECH | |
Vian4g01098 | 4 | 17717721 | 17718947 | Vian1g03645 | 1 | 59193235 | 59194491 | ECH | |
Vian1g03645 | 1 | 59193235 | 59194491 | Vian4g01098 | 4 | 17717721 | 17718947 | PCT |