Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03640 ATGGATTATGAGGAATTTGATTTCTCGTTTGGCTCTCCTTATATGAACCAACTCCATGAGTGTTGCTTAGAAAATGCATTCCCATTTCAAACAGAAGATATATCATCACCAAATACCATAATGGATGAAATGTTTGGTGAAGAGTCTATGGAGGGCTTGCTTCTGCAACACACAAACAACCAGGACTTTGGTTTCATGAATCACAATGATCCACCAGAGATTGAACTCTGTGATGGATTTGGTTCTAGCCCTGAGGAAAATGTGCATGTTTCAATGGAAGAAGAAGAAGAAGGGGATTGTTATTTGAAGGGAATCCAAGCAGAGGTGATGGAACAGACTAGTTTAGCTGATCTTCTGTTAACAGGAGCTGAAGCTGTTGAAGCACAAAACTGGGACCTTGCTTCAGACATAATTGAGAAACTCAACAATGCATCATCTTTAGAAAAGGGTGATGGTCTGTTGAACAGGTTGGCTTTTTTCTTTGCTCAGGGTCTGTATTATAAAAGTACAAATGCCCCTGAACTGTTGTTGCAGCGTGGTGCTGTTTCTACACACAGAGATGCTTTCTGTTTGTTTCAGATTCTCCAAGAACTATCTCCATATGTGAAATTTGCTCATTTCACGGCAAACCAAGCAATCTTAGAAGCCACAGAAGGTGTTGAGAATGTTCACATCGTTGATTTTGACATCATGGAGGGAATCCAGTGGCCACCCTTGATGGTTGATCTTGCAATGAGGAAAAACAGTACTACTTCCCTTAGAGTATCGGCGATCACAGTGGACCAGAGAGGTGCTGCTTCTGCTGAACAAACAGGAAGAAGGCTGAAAGAGTTTGCAGCTTCTATAAACTTTCCATTTACGTTTGATCAAATGATGATGGAAAGAGAAGAAGATATTGAAGGAATTGAAGTTGGTGAAACAGTGATAGTGAACTGTATGATAGACCAGTGGATGCCTAATAGGAGTTTCTCACTGGTGAAAACGTTTTTGGATGGTGTGACGAAACTGTGGCCGAGGCTTGTGGTTTTGGTGGAAGAAGAACTGTTTAATTTTTCAAGGCTGAAATCAATGTCCTTTGTGGAGTTCTTCTGTGAGGCTTTGCATCACTACAGTGCAGTTTGTGATTCACTTGGTAGTAGTGTGTGGGGTAGCCACAAGATGGCGTCGAGGCTGATAGAGAAAGAGATTTTGGGGCTCAGAATATTGGACAGTGTGAGGCAGTTTCCTTGTGAGAGAAATGAGAGAAAGGTTTGGGAAGAAGGGTTTTATTCATTGAAAGGGTTTAAATGTGTTCCTATGAGTAGTTGTAATATTTCACAGGCTAAGTTCTTGGTGAGCCTCTTTGGTGGAGGGTATTGGGTCCAATTCGAGAAGGGTAGGTTGGCCTTGTGTTGGAAGTCACGGCCTTTGACTGTGGCTTCAATATGGGTACCCAAGGGTTATTCCAGTCAAAAAGTCAATTAG 1464 0.4187 MDYEEFDFSFGSPYMNQLHECCLENAFPFQTEDISSPNTIMDEMFGEESMEGLLLQHTNNQDFGFMNHNDPPEIELCDGFGSSPEENVHVSMEEEEEGDCYLKGIQAEVMEQTSLADLLLTGAEAVEAQNWDLASDIIEKLNNASSLEKGDGLLNRLAFFFAQGLYYKSTNAPELLLQRGAVSTHRDAFCLFQILQELSPYVKFAHFTANQAILEATEGVENVHIVDFDIMEGIQWPPLMVDLAMRKNSTTSLRVSAITVDQRGAASAEQTGRRLKEFAASINFPFTFDQMMMEREEDIEGIEVGETVIVNCMIDQWMPNRSFSLVKTFLDGVTKLWPRLVVLVEEELFNFSRLKSMSFVEFFCEALHHYSAVCDSLGSSVWGSHKMASRLIEKEILGLRILDSVRQFPCERNERKVWEEGFYSLKGFKCVPMSSCNISQAKFLVSLFGGGYWVQFEKGRLALCWKSRPLTVASIWVPKGYSSQKVN 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03640 487 ProSiteProfiles GRAS family profile. 106 477 IPR005202 -
Vian1g03640 487 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 96 472 IPR005202 -
Vian1g03640 487 Pfam GRAS domain family 116 476 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03640 Vian-Chr1 59151593 59153056 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03640 115 476 GRAS Transcription Factor Family AT5G41920 33.073 4.02e-43 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vian1g03640 GRAS 1.1e-79 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03640 - - gmx:100804613 788.875
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g03640 1 59151593 59153056 Vian1g03640 1 59151593 59153056 ECH