Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03638 ATGTATGCTTCAACTTCCTTTACTTCACATTTGCTTCATGACCTTCTCATGGACTCAAGCTCAAGAAAGCTACTCCTTCAAGACCCACTTCATCAATCAATCAACGTAGCTGACTTGCCCAAATCCTCAGATTCCATCATTTACAACTCAACAGACTCCTATTTCAAAGGTCGTGACTTCGATGCAAATGTTGTCATGATACTCGCTGTGCTCTTGTGTGCTGTCATTTGCTCACTCGGCTTGAACTCCATCATAAAGTGTGTGTTGAGATGCTCAAACATAGTCATCAACGACCCTTCAACTGTCACCAACTCTTCATCACGTTTGGCCAACACAGGAATCAAGAAGAAAGCCCTCAAGACTTTTCCCACCGTCAGCTACTCAACAGAGTTCAAACTCCCAGGTTTGGACACCGAGTGTGTGATATGCCTCTCAGAGTTTGTCACTGGTGATAAGCTACGCATTCTGCCAAAATGCAACCATGGTTTCCACGTTCGCTGCATTGACAGATGGCTTAGCTCTCACTCATCATGCCCCAAGTGCAGACAGTGCCTCATTGAGACTTGTAAGAAAATTGTTGGATCCCAGCCACCAGTGCCACAGACCATTGTAAGGATCCAACCACTAGAACATGAAGCTTTGGAGCGTAACTATAGGGAACTATGCTAG 669 0.4514 MYASTSFTSHLLHDLLMDSSSRKLLLQDPLHQSINVADLPKSSDSIIYNSTDSYFKGRDFDANVVMILAVLLCAVICSLGLNSIIKCVLRCSNIVINDPSTVTNSSSRLANTGIKKKALKTFPTVSYSTEFKLPGLDTECVICLSEFVTGDKLRILPKCNHGFHVRCIDRWLSSHSSCPKCRQCLIETCKKIVGSQPPVPQTIVRIQPLEHEALERNYRELC 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03638 222 PANTHER RING-H2 FINGER PROTEIN ATL78 17 212 IPR044602 GO:0016567|GO:0016740
Vian1g03638 222 FunFam RING-H2 finger protein ATL73 100 187 - -
Vian1g03638 222 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 100 186 IPR013083 -
Vian1g03638 222 CDD RING-H2_EL5-like 139 182 - -
Vian1g03638 222 ProSiteProfiles Zinc finger RING-type profile. 140 182 IPR001841 -
Vian1g03638 222 SMART ring_2 140 181 IPR001841 -
Vian1g03638 222 SUPERFAMILY RING/U-box 118 187 - -
Vian1g03638 222 Pfam Ring finger domain 139 182 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03638 Vian-Chr1 59109537 59110205 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03638 23 186 C3H Transcription Factor Family AT3G10910 46.199 1.41e-41 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03638 K19040 - gmx:100527126 363.999
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g03638 1 59109537 59110205 Vian4g01103 4 17813893 17814567 PCT