Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03630 ATGGATTCTAACGATTTTCGATCCATATTGGAGAGCGCGGGCATCGACATTTGGATGTTGATGGATGTCGCCATCGCAGTGGCGTCTGCTGACCACAGTGATGAATTGAGGCGTCGAAGAGACGGAATCGTTGAGCGCCTCTACGCGACGAGTTTCTTGTCATCGTCGCGGTGTCCAAATTGTAACATCGACGACGTTAGAGAAACGGAGATGCAAAGCAATCCCTCCGCGGAGGAGGAAAAGGATACTTGCGAAGTTTTATTTGACGATGAACAAAAGAAGATTCTAGAGATTAAAGAGCAACTTGAAGATCCTCACCAGTCCAAAGATTCGTTGTTGGAGTTGTTGCAGAATCTAGCAGACATGGATATTACATTCCGAGCCTTACAAGAGACTGATATTGGGAGGCATGTGAATCGGTTGCGGAAGCATTCGTCTAATGACGTTAAGAAATTGGTGAAGTTGCTAGTCAGGAAATGGAAGGAGATTATAGATGAATGGGTGAAGTTGAAGACGCCAGGAGAAGCGAGTACTACTGTCATGGCTGACGAGGACTCGCCACAAGATAAAATCCAACAAAATGAACATCGTCAGATTCCTGATTTTGCAGACTCGCCAAATCCACACAATGAAAGTTTTGGGTCAGAGCACAACAACATTGAACCACAACAACGAAAACCAAAAGCAATTCCTCACAAAGAATCTCCCCTAAAACCATCGGCATCAAGACAAAGGGAGAGCAATTTTGAGTTGGATAAACTTGCTTCAGCGAGAAAGCGTCTCCAAGAGAACTACAAAGAGGTTGCAAATGCCAAAAAGCAAAGAACGATCCAGGTGATGGATCTCCATGAGTTGCCAAAACCCAAGAATGCCTACTTCGGAAAAGGCAAAGGTGGCACCAGTCAGGGAAGACACTGGTGA 921 0.4528 MDSNDFRSILESAGIDIWMLMDVAIAVASADHSDELRRRRDGIVERLYATSFLSSSRCPNCNIDDVRETEMQSNPSAEEEKDTCEVLFDDEQKKILEIKEQLEDPHQSKDSLLELLQNLADMDITFRALQETDIGRHVNRLRKHSSNDVKKLVKLLVRKWKEIIDEWVKLKTPGEASTTVMADEDSPQDKIQQNEHRQIPDFADSPNPHNESFGSEHNNIEPQQRKPKAIPHKESPLKPSASRQRESNFELDKLASARKRLQENYKEVANAKKQRTIQVMDLHELPKPKNAYFGKGKGGTSQGRHW 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03630 306 Coils Coil 251 274 - -
Vian1g03630 306 SMART TFS2_5 95 166 IPR003617 GO:0005634
Vian1g03630 306 Pfam TFIIS helical bundle-like domain 115 164 IPR017923 -
Vian1g03630 306 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED 1 306 IPR044790 -
Vian1g03630 306 CDD TFIIS_I 92 165 - -
Vian1g03630 306 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 88 178 IPR035441 -
Vian1g03630 306 MobiDBLite consensus disorder prediction 199 249 - -
Vian1g03630 306 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 92 174 IPR035441 -
Vian1g03630 306 ProSiteProfiles TFIIS N-terminal domain profile. 90 167 IPR017923 -
Vian1g03630 306 MobiDBLite consensus disorder prediction 287 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03630 Vian-Chr1 59034934 59036800 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Vian1g03630 Med26 2.1e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03630 - - gmx:100796457 461.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g03630 1 59034934 59036800 Vian1g03630 1 59034934 59036800 ECH