Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03624 ATGTCAGTGCCAATGGCTATTGCTCTCTCTGGTCAACTTCTTCTCGGACAACCTGTAATGGTGAAACCTTCTGAAGCTGAAAAGAACCTTGTTCAATCTAATGCTTCTGGTGGAGCAGCTGGTGTAGCTGGTCCTTATGGAGCTGTGGACAGAAAATTGTATGTGGGGAATCTTCACTTCAACATGACAGAGAGTCAGCTACGGGAGATTTTTGAGCCATTTGGTCCTGTTGAGGTTGTCCAACTGCCTCTTGACTTGGAAACAGGCCACTGCAAGGGTTTTGGGTTTGTTCAATTTACCCATCTTGAACATGCCAAGGCTGCTCAGAGTTTAAATGGAAAATTGGAGATTGCTGGCAGGACTATCAAGGTCTCATGTGTAACGGATCATGTTGGAAGTCAAGATACCACCGCAAAATCGGCAGACTTAGATGATGATGAAGGTGGATTGACTTTAAATGCTCACTCCAGAGCATTGCTGATGCAGAGGCTGGCTGGTGCTGACATTTCTGCAAGCATGGGTATGCCTGTTGTGAATGGCTCAGTTCCTGCTCAGCAGGCTGTTAGCTTACCTATTGGTGCACCAGTTCTTCCAGCACAAGTTATGCCTACCCCAATGGTAGAACCTGTAGGAAGCCCAAGCGAGTGTTTACTTTTAAAGAATATGTTTGATCCTACCACTGAGTCGGAACCAGATTTTGATATAGACATTAAAGAAGATGTAGAGGAAGAGTGTTCTAAATATGGCCGGGTGAAGCATATTTTTGTTGACAAAAAAAGTGCAGGTTTTGTCTATTTGCAATTTGAAACAGTGGAAGCAGCGAGTGCTGCTCAACGTGCAATGCACATGAGATGGTTTGCACGCAGGTTAATTTCAGCAATCTTCATGCAACCACAATTATACGAAGCCAAGTTTAAAGGGGAGTGA 927 0.4444 MSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNASGGAAGVAGPYGAVDRKLYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDLETGHCKGFGFVQFTHLEHAKAAQSLNGKLEIAGRTIKVSCVTDHVGSQDTTAKSADLDDDEGGLTLNAHSRALLMQRLAGADISASMGMPVVNGSVPAQQAVSLPIGAPVLPAQVMPTPMVEPVGSPSECLLLKNMFDPTTESEPDFDIDIKEDVEEECSKYGRVKHIFVDKKSAGFVYLQFETVEAASAAQRAMHMRWFARRLISAIFMQPQLYEAKFKGE 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03624 308 Gene3D - 47 143 IPR012677 -
Vian1g03624 308 Gene3D - 210 308 IPR012677 -
Vian1g03624 308 FunFam Splicing factor, CC1-like protein 210 308 - -
Vian1g03624 308 CDD RRM2_RBM23_RBM39 53 130 - -
Vian1g03624 308 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 144 233 IPR029123 -
Vian1g03624 308 NCBIfam splicing factor, CC1-like family 1 305 IPR006509 GO:0003723|GO:0005634|GO:0006397
Vian1g03624 308 SMART rrm1_1 52 125 IPR000504 GO:0003723
Vian1g03624 308 SMART rrm1_1 216 293 IPR000504 GO:0003723
Vian1g03624 308 SUPERFAMILY RNA-binding domain, RBD 51 298 IPR035979 GO:0003676
Vian1g03624 308 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 238 291 IPR000504 GO:0003723
Vian1g03624 308 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 53 123 IPR000504 GO:0003723
Vian1g03624 308 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 51 129 IPR000504 GO:0003723
Vian1g03624 308 FunFam Splicing factor CC1-like 34 140 - -
Vian1g03624 308 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 305 IPR006509 GO:0003723|GO:0005634|GO:0006397
Vian1g03624 308 CDD RRM3_RBM39_like 214 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03624 Vian-Chr1 58975063 58978844 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03624 36 289 Eukaryotic Initiation Factors Gene Family AT4G34110 26.786 1.70e-10 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03624 K13091 - gmx:100793461 563.148
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g03624 1 58975063 58978844 Vian4g01120 4 18516375 18519643 ECH
Vian1g03624 1 58975063 58978844 Vian1g03624 1 58975063 58978844 ECH
Vian1g03624 1 58975063 58978844 Vian4g01120 4 18516375 18519643 PCT