Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03622 ATGGCGAATAATAGAGAACAGGGTAACGAGGGTGACCGGAGTTACCTGGGCAAAGCGAGAAACTATCATTCGTTGTCAATGCCGATGATGTTTTCGGGATTGGATAGGGAGAGGGAGATGTCAGCCATGATCTATGCTTTGACTCAAGTTGTCACCGGAGAGGAACATGATCATGATCATGATCACGATCACTCGCTTCTTCATCAAAACATTGATAAAAGTGCAATTGGAGGTGGTGGTGGCGATGGTTTTACCATAACATCAAACGTGGATTCTGGTCCCATCGCACCATCTTCTGCATGTTCATCTTATTGTGGAAACTCTGTTCCAAAGAGAAGGAGGGAAGGTGACGATACAAGTGATCTCCCACGTGGAACTTCTTTCCCTGCTATTTCAACATATGGAGTTGGCGAAAGTTCAAGCAGGATGAGGAAGGAAAGGAGAGAAATGGAGAATAAGGTATACGATTACGAGTACAGGGCAGAGAAGGTGGGAATGGAAGAGGAACCAAAAAGGAAATACAGAGGAGTGAGGCAGAGGCCATGGGGGAAATGGGCTGCGGAAATAAGGGACCCATTCAAGGCTACCAGAGTGTGGTTAGGAACATTCGAGACCGCTGAAGATGCAGCCAGAGCCTACGATGAAGCTTCCTTACGTTTCAGAGGCAACAAAGCCAAACTCAACTTCCCCGAAAATGTCAGGCTCAGACACCAATCACCGGAACCACCACCAGCCGCACCCCTTTTCTCCATTCCGTCTACAACTGAACCCATTGTTCACACTCAACCTCAGGGTTCACATGATTCCGGCAACTTTTATGAATATTGTTATTCGCATGTACATGAGTTTCCCGTGAGCCTCTATGACCAGGTTGCCGTCTCATCATCATTCTCTGTGGCGGCTTCTCATCTTCAATCTTCACCTTCATATTCTTCTTCCTCAACTATCTCTTCTTCCCAACCATCTCTACTTTCCCCTCATGCTACGCATCTATCCCCATGGTCTTCTGCGCCTGATTACACTAAGACCTCCCATCCTTCCTCCTCCTAG 1050 0.4724 MANNREQGNEGDRSYLGKARNYHSLSMPMMFSGLDREREMSAMIYALTQVVTGEEHDHDHDHDHSLLHQNIDKSAIGGGGGDGFTITSNVDSGPIAPSSACSSYCGNSVPKRRREGDDTSDLPRGTSFPAISTYGVGESSSRMRKERREMENKVYDYEYRAEKVGMEEEPKRKYRGVRQRPWGKWAAEIRDPFKATRVWLGTFETAEDAARAYDEASLRFRGNKAKLNFPENVRLRHQSPEPPPAAPLFSIPSTTEPIVHTQPQGSHDSGNFYEYCYSHVHEFPVSLYDQVAVSSSFSVAASHLQSSPSYSSSSTISSSQPSLLSPHATHLSPWSSAPDYTKTSHPSSS 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03622 349 SMART rav1_2 173 236 IPR001471 GO:0003700|GO:0006355
Vian1g03622 349 PRINTS Ethylene responsive element binding protein signature 196 212 IPR001471 GO:0003700|GO:0006355
Vian1g03622 349 PRINTS Ethylene responsive element binding protein signature 174 185 IPR001471 GO:0003700|GO:0006355
Vian1g03622 349 MobiDBLite consensus disorder prediction 95 147 - -
Vian1g03622 349 CDD AP2 173 232 IPR001471 GO:0003700|GO:0006355
Vian1g03622 349 Gene3D AP2/ERF domain 172 232 IPR036955 GO:0003700|GO:0006355
Vian1g03622 349 ProSiteProfiles AP2/ERF domain profile. 173 230 IPR001471 GO:0003700|GO:0006355
Vian1g03622 349 PANTHER DNA-BINDING DOMAIN 145 307 IPR044808 GO:0003700|GO:0009873
Vian1g03622 349 SUPERFAMILY DNA-binding domain 173 231 IPR016177 GO:0003677
Vian1g03622 349 MobiDBLite consensus disorder prediction 308 349 - -
Vian1g03622 349 FunFam Ethylene-responsive transcription factor 2 172 231 - -
Vian1g03622 349 Pfam AP2 domain 173 222 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03622 Vian-Chr1 58952103 58953313 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03622 171 235 AP2-EREBP Transcription Factor Family AT5G61890 81.538 3.68e-32 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vian1g03622 AP2 4.2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03622 - - var:108344045 651.744
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g03622 1 58952103 58953313 Vian1g03622 1 58952103 58953313 ECH