Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03609 ATGTCAACAACTTCACATACCATTGCTCACCACAGCTTATTTGAGGAGCAAGATCAGATTCCTACACAGATGGGGTTCTTTCCCTTTCCATCAAACCTTACTTTGCCTCCTTTGGGTTGCCATCAATCCTCTTTGAAAGCCTTCACCTCCATAACAACACCTTCTTCACTTGCCATATCTCAACAGGATTCTTCTACATCAAATCTAACAGAAACCCTATTTCACAAGTCAACTTCTACCTTTGGAGGAGCTCAGTTCCTGTCCTTGCATAGATCCAGTCTAAATCCATGGGCACTGGGAGAAGTGAGTGACTGCTTCGGCAGTAAAAGAAGTGGATTTGATGATCATCATCATCTGGGAATTTCAGCCATGAAGATGAAGAAAATGAAGGCAAGAAGGAAGGTTAGAGAGCCTAGGTTTTGCTTCAAGACTATGAGCGATGTGGATGTATTGGACGATGGCTACAAGTGGAGGAAGTACGGACAGAAAGTTGTGAAGAACACGCAGCACCCCAGAAGCTATTACCGTTGCACACAAGATAACTGTCGTGTAAAGAAACGCGTGGAGCGCTTAGCGGAGGATCCGAGAATGGTGATAACAACATATGAAGGGAGACATGTTCACTCTCCATCAAATGATCTTGAAGATTCTTCATCTCCATCTCAACTTGGGAACTTCTTATGGTAG 687 0.4381 MSTTSHTIAHHSLFEEQDQIPTQMGFFPFPSNLTLPPLGCHQSSLKAFTSITTPSSLAISQQDSSTSNLTETLFHKSTSTFGGAQFLSLHRSSLNPWALGEVSDCFGSKRSGFDDHHHLGISAMKMKKMKARRKVREPRFCFKTMSDVDVLDDGYKWRKYGQKVVKNTQHPRSYYRCTQDNCRVKKRVERLAEDPRMVITTYEGRHVHSPSNDLEDSSSPSQLGNFLW 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03609 228 FunFam WRKY transcription factor 57 137 211 - -
Vian1g03609 228 Gene3D WRKY domain 138 204 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vian1g03609 228 ProSiteProfiles WRKY domain profile. 146 211 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vian1g03609 228 Pfam WRKY DNA -binding domain 152 208 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vian1g03609 228 MobiDBLite consensus disorder prediction 213 228 - -
Vian1g03609 228 MobiDBLite consensus disorder prediction 207 228 - -
Vian1g03609 228 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 79 212 IPR044810 GO:0003700
Vian1g03609 228 SMART WRKY_cls 151 210 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vian1g03609 228 SUPERFAMILY WRKY DNA-binding domain 143 210 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03609 Vian-Chr1 58850571 58852088 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03609 121 228 WRKY Transcription Factor Family AT4G39410 77.876 7.50e-62 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vian1g03609 WRKY 9.6e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03609 - - pvu:PHAVU_002G266400g 425.631
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g03609 1 58850571 58852088 Vian1g03609 1 58850571 58852088 ECH