Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03591 ATGACAGGGAAGAGAAACCAGACACCAACAACAACAACAGCAACAACAATAAGTCCTGTGGGAAGTCCAACTTCTGGTAACATCTCAGACAGTTCCTCAAAAGAACAAGACAGGTTCCTCCCCATAGCCAACGTTAGCCGCATCATGAAAAGGGCACTCCCTCCCAATGCAAAAATCTCAAAGGAAGCCAAAGAAACAGTTCAAGAGTGTGTGTCTGAGTTCATCAGCTTCATCACCGGTGAGGCCTCAGACAAGTGCCAGAGAGAAAAGAGGAAGACCATCAACGGTGATGATCTTCTCTGGGCCATGACAACCCTAGGATTTGAGAACTATGTTGGACCCTTGAAGCTCTACCTCAACAACTACCGGGAAACTGAGGGAGAAAAGAGTTCCATGGCCAAACAAGAAGAACACTCTCCAACTCATCAAACCAATGATGGGCTGCCTGAACTCAACAAGTTGCCTCATTCTTCTGCAACAAAACCAGACTTCAACTCTTTCACTGCTGGCTTCTATTCTGTGGGGCCTCAATTAACACCTCCAAAGAGCTTCACAGATATTGGAGGAATCAACGGTTATAGAGAGACCTCCATGAACAGTGTCATTGCTCAAAGTGCGGTCAGTGCTGATCAAGATGCAAGTGGTAATAGAATGATGCCATCTGACCTACGTTATAGGGTTGAATGGTAG 690 0.4594 MTGKRNQTPTTTTATTISPVGSPTSGNISDSSSKEQDRFLPIANVSRIMKRALPPNAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKLYLNNYRETEGEKSSMAKQEEHSPTHQTNDGLPELNKLPHSSATKPDFNSFTAGFYSVGPQLTPPKSFTDIGGINGYRETSMNSVIAQSAVSADQDASGNRMMPSDLRYRVEW 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03591 229 MobiDBLite consensus disorder prediction 1 37 - -
Vian1g03591 229 SUPERFAMILY Histone-fold 36 147 IPR009072 GO:0046982
Vian1g03591 229 ProSitePatterns NF-YB/HAP3 subunit signature. 70 86 IPR003956 GO:0005634|GO:0006355|GO:0043565
Vian1g03591 229 MobiDBLite consensus disorder prediction 128 159 - -
Vian1g03591 229 MobiDBLite consensus disorder prediction 128 143 - -
Vian1g03591 229 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 16 144 IPR027113 GO:0001228|GO:0006355|GO:0016602
Vian1g03591 229 FunFam Nuclear transcription factor Y subunit B-3 28 150 - -
Vian1g03591 229 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 39 103 IPR003958 -
Vian1g03591 229 Gene3D Histone, subunit A 28 161 IPR009072 GO:0046982
Vian1g03591 229 PRINTS CCAAT-binding transcription factor subunit A signature 105 123 - -
Vian1g03591 229 PRINTS CCAAT-binding transcription factor subunit A signature 67 85 - -
Vian1g03591 229 PRINTS CCAAT-binding transcription factor subunit A signature 86 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03591 Vian-Chr1 58635565 58636254 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03591 21 136 CCAAT-HAP3 Transcription Factor Family AT4G14540 78.448 3.16e-63 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Vian1g03591 CBFD_NFYB_HMF 1.1e-26 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03591 K08065 - gmx:100810059 352.443
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g03591 1 58635565 58636254 Vian1g03591 1 58635565 58636254 ECH