Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03580 ATGGATGCTTCATCCTCACAGTTTGTTTCCTCAAGAAGAATGGAAGTAGTGTATGATCCTATCCATCAAATTAGCATGTGGGAAGAAAATTTCAAAAGTAATGCTAATACTTTAACTGCATCCACCTCCATAATTGAAGAGCTGGACATGAAGTTTGATAATCAAGTTCAGGCGCAATCAGAGGAGGTTTCTCATGGAATATTTGGAACATCTGTGAAGTACAACCAAGATCATAATAGACTGGTTGATAAGACACAAAGACGTCTTGCTCAAAATCGAGAGGCTGCTCGAAAGAGTCGTTTGAGGAGAAAGGCATACGTGCAACAGTTGGAATCGTGTCGTTTGAAGCTGATGCAGTTAGAGCAAGAGGTAGATCATGCTAAACGACAGGGATTGTATATTGGTGACGGATTGGGTTCTAATAATTTGGGTTTTGCTGGCTCTGTAAATTCAGGAATAGCAATTTTTAAGATGGAGTACGAACATTGGGTAGAGGAGCAAAACAGACATATCTTGGAAATGAGAACTGCTTTAAGTTCTGAGATAGGTGACATGCAACTGGGGAACCTTGTACAAAGCATAATGAACCACTACTCCAAACTCTTTAGCATGAAATCTGCTGCTGCAAAAGCAGATGTTTTCTACGTTATGTCTGGCATGTGGATGACAACAGCTGAACGATTTTTCTTGTGGATTGGAGGATTTCGCCCCTCTGAACTTCTTAAGGTTCTGATCCCTCTGAGTGGACCTTTGACAGAGCAACAACTGTTTGATACCTATGGCCTAGAAAAATCATGCCAACAAGCAGAAGATGCTCTTTCACAAGGAATGGAAAAACTTCAGCAAATGCTTGCTGACAGTGTTGGGCGAGGACACTTAGTTGAAGGAACCCACATTCCACAGATGGATACTGCAATGGAGAGGTTGGAAGCTCTGGTGAGCTTTGTCAATCAGGCTGATCATCTACGACAAGAAACCTTGCGACAAATGTATCGAATACTTAGCATACATGAGATTGGTCAGTTTCTGCTTGTTCTAGGAGAATATTTTCAACGCTTAAGGGCTTTGAGCAAACTTTGGGCTAATCGATCTCGAGAAGCACTTCCTTAG 1110 0.4162 MDASSSQFVSSRRMEVVYDPIHQISMWEENFKSNANTLTASTSIIEELDMKFDNQVQAQSEEVSHGIFGTSVKYNQDHNRLVDKTQRRLAQNREAARKSRLRRKAYVQQLESCRLKLMQLEQEVDHAKRQGLYIGDGLGSNNLGFAGSVNSGIAIFKMEYEHWVEEQNRHILEMRTALSSEIGDMQLGNLVQSIMNHYSKLFSMKSAAAKADVFYVMSGMWMTTAERFFLWIGGFRPSELLKVLIPLSGPLTEQQLFDTYGLEKSCQQAEDALSQGMEKLQQMLADSVGRGHLVEGTHIPQMDTAMERLEALVSFVNQADHLRQETLRQMYRILSIHEIGQFLLVLGEYFQRLRALSKLWANRSREALP 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03580 369 Coils Coil 266 286 - -
Vian1g03580 369 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 87 102 IPR004827 GO:0003700|GO:0006355
Vian1g03580 369 Pfam Seed dormancy control 171 245 IPR025422 GO:0006351|GO:0043565
Vian1g03580 369 SUPERFAMILY Leucine zipper domain 84 125 IPR046347 GO:0003700|GO:0006355
Vian1g03580 369 PANTHER TRANSCRIPTION FACTOR TGA9 3 366 - -
Vian1g03580 369 SMART brlzneu 80 140 IPR004827 GO:0003700|GO:0006355
Vian1g03580 369 Pfam bZIP transcription factor 84 112 IPR004827 GO:0003700|GO:0006355
Vian1g03580 369 Coils Coil 103 130 - -
Vian1g03580 369 Gene3D - 83 132 - -
Vian1g03580 369 ProSiteProfiles DOG1 domain profile. 153 363 IPR025422 GO:0006351|GO:0043565
Vian1g03580 369 FunFam BZIP family transcription factor 83 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03580 Vian-Chr1 58528326 58532679 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03580 1 367 Calmodulin-binding Proteins AT5G65210 61.456 1.22e-163 461
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vian1g03580 DOG1 1.6e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03580 K14431 - gmx:100780003 620.542
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g03580 1 58528326 58532679 Vian1g03580 1 58528326 58532679 ECH
Vian1g03580 1 58528326 58532679 Vian2g03062 2 51226643 51229230 PCT