Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03577 ATGACAAGGTCTGTGTGTGAGTTCTTGTATGAGCTCTACGCCAAGACAATAGTCCTTGTAACATACATGCTAATACAACTTATCCTTATCATACGCTACCTTAAGTCAAACACACCTGCAATATCAACCACCCAATACCTCAGTTTCATCGAAGAGAAGAACCCCGCCATTCGTTACACCACAAGACTCAAGGCAGAGCACATAGACTGCAGAGTTTGTCTCTCTGAATTCCAGGAAGGGGAGAAGGTCAGGAACCTCAACTGCAGACACACTTTTCACAAGGATTGCTTGGACCAGTGGTTGCAGCAATACTGTGCTACTTGCCCACTTTGCAGGCACAAGGTCTTGCCAGATCATGTTGTCGCCAACTACAACCTCCTTCAAAATCAGGTACAAGAAGAAGAAGAAGACTACGATGGCAATGATCACCAACTCATCTTTTTCTTATCTGCATTAAGGGGTGGTAGCACTTGGCACACATATCTCTGA 489 0.4479 MTRSVCEFLYELYAKTIVLVTYMLIQLILIIRYLKSNTPAISTTQYLSFIEEKNPAIRYTTRLKAEHIDCRVCLSEFQEGEKVRNLNCRHTFHKDCLDQWLQQYCATCPLCRHKVLPDHVVANYNLLQNQVQEEEEDYDGNDHQLIFFLSALRGGSTWHTYL 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03577 162 SMART ring_2 70 111 IPR001841 -
Vian1g03577 162 SUPERFAMILY RING/U-box 47 124 - -
Vian1g03577 162 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 35 117 IPR013083 -
Vian1g03577 162 PANTHER - 4 157 - -
Vian1g03577 162 Pfam Ring finger domain 69 112 IPR001841 -
Vian1g03577 162 ProSiteProfiles Zinc finger RING-type profile. 70 112 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03577 Vian-Chr1 58476768 58477256 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03577 69 122 C3H Transcription Factor Family AT1G15100 57.407 5.35e-18 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03577 K16282 - gmx:102669811 263.848
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g03577 1 58476768 58477256 Vian1g03577 1 58476768 58477256 ECH
Vian1g03577 1 58476768 58477256 Vian2g03065 2 51257196 51257687 PCT