Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03572 ATGGCCACTACACTTGCTTGGAGACACGCTGGCAACAATGCAAATGATCTGGAAAGAAATGGTGATAGGAATACTCAAGATTCAGAGCCCGCAACTCCACATTCTGTTCTGAAGATGGGATTTAGAGAGCGTAACAGCAGCATGGAGGATCCAGATGGAACATTAGCTAGTGTTGCCCAATGCATTGAGCAGTTGCGTCAGAGCTCTTATTCTGTGCAGGAGAAAGAGTATTCCTTAAGACAGCTATTGGAGCTTATAGATATGCGGGAAAATGCTTTTAGTGCTGTTGGATCTCACTCTCAGGCAGTTCCAGTACTTGTTTCCCTTCTCAGGTCTGGTTCATTGAATGTAAAGATACAGGCAGCAACTGTCTTGGGCTCCCTTTGTAAAGAAAATGAACTAAAGGTGAAGGTCTTGCTTGGAGGATGCATTCCTCCATTGCTTAGTCTATTAAAGTCCAGTTCTACCGAAGGACAAATTGCTGCTGCAAAGACTATTTATGCTGTTTCTCAAGGTGGTGTAAAGGATCATGTTGGTTCAAAAATATTTTCAACTGAAGGAGTTGTACCAGTGCTCTGGGAGCAGCTTAAAACTGGTCTAAAGGCAGGAAATGTAGTTGAAGGTTTATTGACTGGTGCATTGAAAAATCTCTCCAGCAACACTGAGGGATTCTGGAATGCAACTATACGAGCTGGAGGAGTGGACATATTAGTGAAGTTACTGGCAAAAGGACAGCCCAGCAGTTTAGCAAATGTGTGCAATTTACTTGCTTCTGTAATGATGGAGGATGCATCTGTTTGTTCAAAGGTGTTGACAGCGGAGGTGACAAAACAACTTCTGAAACTATTAGGCCCTGGTAATGATGACTCTGTTAGAGCTGAAGCAGCTGGTGCTCTTAAATCTCTTTCTGCTCAGTGCAAAGAAGCAAGGCGAGAGATAGCCAATGCTAATGGTATTCCTTCTCTGATCAATGCTACCATAGCTCCTTCCAAAGAATTCATGCAGGGTGAGTGTGCTCAAGCATTACAAGAGAATGCTATGAGTGCTCTAGCAAACATCTCTGGTGGTTTGTCTTATGTCATATCTAGCCTTGGTCAAAGTCTTGAATCATGCACCTCACCTACCCAAATTGCTGACACATTAGGAGCTTTGGCATCAGCTCTCATGATTTATGATACCAAGGCCGAATCAACCAGAGCATCAGATCCTTTGGTTGTCGAGCAGACATTACTCAAACAATTTGAACCTCGCTTGCCCTTCCTTGTGAAGGAACGGACCATTGAAGCGCTTGCCAGTTTGTATGGAAATTCCGTACTTTCAAATAAACTTGCAAATGCGGATGCAAAACATCTGCTAGTTGGTTTGATAACAATGGCTGCAAATGAAGTGCAAGACGAGCTTATAAAAGCTCTGTTGACAGTGTGCAAAAGTGAAGGCAGTCTATGGCGTGCACTTCAGGGCCGTGAAGGAGTTCAGCTATTGATATCTCTTTTGGGGCTTTCATCAGAACAGCAACAAGAGTGCGCAGTTGCCCTGCTTTGCCTTCTATCATTTGAAAATGATGAAAGTAAATGGGCGATTACTGCAGCTGGTGGCATACCTCCACTCGTTCAAATTTTGGAGACAGGATCAGCAAAAGCAAAGGAAGATTCAGCAACAATCCTTAAGAACCTGTGCAATCATAGCGAAGATATACGCGCTTGTGTTGAAAGTGCCGATGCTGTTCCTGCATTATTGTGGCTATTGAAAAATGGAAGCCCAAATGGGAAGGATATTGCTGCAAAAACTTTAAATCATTTAATTCATAAATCGGATACTACAACCATTAGTCAGCTTACAGCTTTATTGACTAGTGATCTTCCTGATTCTAAGGTTTATGTTTTGGACGCTTTAAGAAGTATGCTTTCTGTTGCTCCCCTTAGTGACATTTTACGTGAAGGTAGTGCTGCCAGCGATGCATTTGATACTATGATAATATTATTGGGCTCTGCCAAAGAAGAAACTCAGGCAAAGTCTGCATCGGCTCTGGCAGGAGTTTTTGAAACAAGGAAAGATGTGCGTGAAAGTAGCATTGCCGTCAAAACTCTTTTGTCAGCCAAGAAATTGCTCAATGCTGAATCTGAAAGTATCCTGATTGAGTCCTCCCACTGCCTGGCTGCAATATTTCTTTCCATCAAAGAGAACAGGGATGTAGCTACTATCGCCAGAGACACATTATCCCCTCTAGTTTCACTAGCAAATTCTTCAGTTTTGGAAGTTGCAGAGATGGCCACATGTGCTCTGGCAAACCTTATTTTGGATGGTGAAGTTGCAGAGAAAGCTATTGCAGAAGAAGTTATCTTACCTGCCACTAGAATATTATGTGAAGGCACAATTTCGGGAAAAACTCATGCTGCAGCAGCAATTGCTCGCCTCTTACATTCTCGGGCTGTAGATTATGCTGTAACTGATTGTGTGAATCGTGCTGGAACTGTTCTTGCATTAGTTTCTTTCTTAGATTCTGCTGTCAATGGATCTGTTGCTACATCGGAGGCTCTAGAAGCACTTGCCATACTGTCCAGGTCGGTAGAGACCAGAGAAAATATTAAATCTGCTTGTGCTGTTTTGGCTGAATTCCCTAAAAGCATAAGCCCAATAGTCTTGTGTATTGTTGATTCGGAGCCAATGTTGCAGGATAAAACTATTGAGATTTCATCTCGATTATGTAAGGATCAGCCTGTTGTTTTAGGAGAGACTATTGTGTCAGCACCTGGATGTATATCTTCAATAGCTAAGAGGATAATTAGTTCCACAAATGTAAAGGTCAAAATTGGGGGAGCAGCGCTCCTTATTTGTACTTCTAAAGCAAATCATCAGAGACTGGTGGAGGATCTGAGTTCATCGAATTTGTGTTTTGATCTTATTCGATCTCTTGTTGATATTCTTGTTTCTGCAGTGCCTTCTTCGGGTTACCTGGATGGTGACAACCAGGAGCTCATTAGCATATGCAGGCACATAACAGAAGAGGCCAACAATTCTGAATCCAACACTAGCACTAGCTTTATCTGTGGTGTTGACTTGGCGCTATGGCTACTGTCTATTCTTGCTTGTAATGATGAAAAAAATAAAATTGCAATAATGGAGGCTGGAGCAATTGATGTTCTCATCGACAGAATCTCGAATTGTTTCTCGCAATATTCTCAGATTGACTACAAAGAAGATAGCGTCATGTGGATTCATGCTTTGTTGTTGGCGATATTGTTTCAAAATAGAGATATCATACGGGCACATCCAACTATGAAATCTGTACCAGCACTTACCAGTTTAATGAAATCAGAGCCATCAGCAAACAAATATTTTGCTGCACAATCTATAGCTAGCCTTGTCTGTAATGGTAGCAGGGGAACACTCCTGTCTGTGGCAAATTCTGGGGCAGCAGGTGGACTTATCTCTTTGCTTGGCTGTGCTGATACTGATATACAGGATCTTCTGGAATTGTCAGAGGAATTTTCTTTGGTGCGTTATCCTGATCAAGTGGCTCTTGAGAGGTTGTTTCGAGTTGAAGATATAAGAGTTGGAGCCAGTTCTCGGAAGGCTATACCAGCCTTAGTTGATCTGCTCAAACCAATTCCAGATCGTCCAGGGGCACCCTTTTTGGCACTTGTACTTTTGACTCAGCTCGGTAAAGATTGCCCTTCAAATATGAGTGTAATGGTGGAGTCTGGGGCCTTAGAAGCACTTACGAAGTATCTTTCACTCAGTCCGCAAGATGCAACTGAAGAAGCTGCTACAGATCTGCTAGGAATTCTGTTTAGCAGTGCTGAAATAAGAAGACACGAATCAGCATTTGGCGCTGTTGCTCAACTTATAGCTGTGCTACGGTTAGGAGGAAGAGGTGCAAGGTATAGTGCTGCAAAAGCCTTGGAAAGTTTGTTTTCTGCTGATCACATCAGAAATGCAGAGATTGCTCGGCAGGCTGTTCAACCATTGGTGGAGATTCTCAGTACTGGTTCAGAAAAGGAGCAGCATGCTGCCATTGCTGCATTGGTGGGGTTACTGAGTGAAAATCCATCAAGAGCTCTTGCTGTTGCAGATGTTGAGAAGAATGCAGTGGAAGTTCTTTGTAGGATCCTTTCATCAAGTTGTTCAATGGACCTGAAAGGGGATGCTGCTGAATTATGTTGTGCTCTTTTTGGAAATACAAGGATTCGCTCCACAGCAGCTGCTGCAAGTTGTGTTGAACCTCTTGTCTCTCTCCTTGTATCTGAGTTCAGTCCAGCTCAGCTTTCAGTTGTCAGGGCACTGGATAGGCTTGTTGATGATGAGCAACTGGCGGAATTAGTTGCTGCACATGGTGCAGTTGTTCCTCTTGTTGGCCTACTGTCGGGTACAAATTATATACTACATGAGGCCATTTCCAGAGCTCTAGTCAAGTTGGGAAAAGACAGGCCTGCTTGTAAAATGGAGATGGTTAAAGCTGGAGTTATTGAAAGCGTACTTGACATCTTACATGAAGCACCCGATTATCTATGTGCAGCTTTTGCAGAATTGTTGCGTATATTGACTAATAATGCTAGTATAGCTAAAGGACCATCTGCTGGTAAAGTGGTTGAACCATTGTTTTTGTTACTGACAAGGCAGGAATTTGGGCCTGATGGACAGCACAGTGCATTGCAGGTTTTGGTTAATATCTTAGAACATCCAAAGTGTCGTGCTGACCATTCATTAACTTCTCGCCAAGTTATTGAACCACTTATCCCTTTGCTCGATTCTTCAATTTCAGCAGTGCAACAGTTGGCTGCTGAGCTTCTTTCACATCTACTTCTCGAAGAACGCCTTCAGAAGGATCCTGTGACACAGCAAGCAATTGGCCCTCTCATTCGAGTTCTTGGTTCTGGTATACACATACTGCAGCAGAGAGCTGTAAAAGCCCTTGTTAGTATTGCACTAACATGGCCAAACGAAATTGCTAAAGAGGGTGGTGTCATTGAAATTTCCAAAGTGATATTGCAAGCTGATCCTTCCCTTCCTCACGCTTTATGGGAGTCTGCTGCCTCCGTTTTGTCTAGTATTCTGCAGTTTAGCTCTGAATTCTACTTGGAAGTGCCTATTGCTGTATTGGTAAGGTTGCTTCGATCTGGCTCAGAGAGCACGGTTGTTGGTGCTTTAAATGCTCTTTTGGTGCTAGAAAACGATGATGGAACTAGTGCAGAAGCTATGTCGGAAAGTGGAGCTATAGAGGCTCTCTTGGAGCTCCTGCGATCTCATCAGTGTGAGGAAACTGCCGCAAGACTTTTAGAAGTATTGCTGAACAATGTAAAGATTCGAGAAACAAAAGTAACAAAATCAGCTATCGTACCACTATCGCAGTACCTTTTGGACCCACAAACTCAAGCACAGCAGGCAAGGTTATTGGCAACTTTGGCTCTCGGGGATCTGTTTCAGAATGAGGGCCTTGCTCGAACAAGTGATGCAGTTTCAGCTTGTCGTGCTTTAGTAAACGTGCTTGAAGACCAACCAACAGAAGAAATGAAAGTTGTAGCCATATGTGCTTTGCAGAATCTTGTGATGTATAGTCGATCAAATAGAAGAGCAGTTGCAGAGGCTGGTGGTGTTCAGGTTGTACTGGATCTGATAGGTTCAAGTAATCCAGAAACATCAGTTCAGGCTGCGATGTTTGTTAAACTTTTATTCTCAAATAATACTATTCAAGAGTATGCTTCCAGTGAAACAGTCAGAGCGATAACTGCTGCTATTGAAAAAGATTTATGGGCTTCTGGAACTGTGAATGACGAGTATCTGAAAGCCTTAAATTCTCTATTTAGCAACTTCCCAAGACTTAGAGCAACTGAACCATCTACACTTAGCATTCCCCATCTGGTTACAGCCTTAAAGACAGGTTCAGAAGCGTGTCAGGAAGCAGCATTAGATGCACTTTTCCTGCTCAGACAAGCTTGGTCAGCATGCCCAGCTGAAGTTTCTAGAGCTCAGTCAATTGCAGCTGCAGATGCTATTCCACTGCTGCAGTACTTAATACAGTCTGGGCCACCTCGGTTTCAGGAGAAAGCAGAATTTTTGTTGCAGTGTTTGCCGGGGACATTGGTAGTGATCATCAAACGTGGTAACAATATGAAACAATCCGTTGGAAACCCAAGTGTTTACTGCAAGCTTACACTCGGCAACACTCCTCCAAGGCAAACCCAGGTGGTTTCAACTGGCCCTAATCCAGAGTGGGATGAGAGCTTTTCATGGACCTTTGAGAGTCCTCCCAAAGGCCAGAAGCTTCATATTTCTTGCAAAAATAAGAGCAAAGTGGGAAAGAGTAAATTCGGGAAAGTAACAATCCAGATTGATCGAGTGGTAATGCTTGGATCAGTGGCCGGAGAGTACGCTTTGTTGCCTCAAAGTAAAAGTGGGCCGCCACGGAATCTAGAAATAGAATTTCAGTGGTCTAACAAGTGA 6441 0.4316 MATTLAWRHAGNNANDLERNGDRNTQDSEPATPHSVLKMGFRERNSSMEDPDGTLASVAQCIEQLRQSSYSVQEKEYSLRQLLELIDMRENAFSAVGSHSQAVPVLVSLLRSGSLNVKIQAATVLGSLCKENELKVKVLLGGCIPPLLSLLKSSSTEGQIAAAKTIYAVSQGGVKDHVGSKIFSTEGVVPVLWEQLKTGLKAGNVVEGLLTGALKNLSSNTEGFWNATIRAGGVDILVKLLAKGQPSSLANVCNLLASVMMEDASVCSKVLTAEVTKQLLKLLGPGNDDSVRAEAAGALKSLSAQCKEARREIANANGIPSLINATIAPSKEFMQGECAQALQENAMSALANISGGLSYVISSLGQSLESCTSPTQIADTLGALASALMIYDTKAESTRASDPLVVEQTLLKQFEPRLPFLVKERTIEALASLYGNSVLSNKLANADAKHLLVGLITMAANEVQDELIKALLTVCKSEGSLWRALQGREGVQLLISLLGLSSEQQQECAVALLCLLSFENDESKWAITAAGGIPPLVQILETGSAKAKEDSATILKNLCNHSEDIRACVESADAVPALLWLLKNGSPNGKDIAAKTLNHLIHKSDTTTISQLTALLTSDLPDSKVYVLDALRSMLSVAPLSDILREGSAASDAFDTMIILLGSAKEETQAKSASALAGVFETRKDVRESSIAVKTLLSAKKLLNAESESILIESSHCLAAIFLSIKENRDVATIARDTLSPLVSLANSSVLEVAEMATCALANLILDGEVAEKAIAEEVILPATRILCEGTISGKTHAAAAIARLLHSRAVDYAVTDCVNRAGTVLALVSFLDSAVNGSVATSEALEALAILSRSVETRENIKSACAVLAEFPKSISPIVLCIVDSEPMLQDKTIEISSRLCKDQPVVLGETIVSAPGCISSIAKRIISSTNVKVKIGGAALLICTSKANHQRLVEDLSSSNLCFDLIRSLVDILVSAVPSSGYLDGDNQELISICRHITEEANNSESNTSTSFICGVDLALWLLSILACNDEKNKIAIMEAGAIDVLIDRISNCFSQYSQIDYKEDSVMWIHALLLAILFQNRDIIRAHPTMKSVPALTSLMKSEPSANKYFAAQSIASLVCNGSRGTLLSVANSGAAGGLISLLGCADTDIQDLLELSEEFSLVRYPDQVALERLFRVEDIRVGASSRKAIPALVDLLKPIPDRPGAPFLALVLLTQLGKDCPSNMSVMVESGALEALTKYLSLSPQDATEEAATDLLGILFSSAEIRRHESAFGAVAQLIAVLRLGGRGARYSAAKALESLFSADHIRNAEIARQAVQPLVEILSTGSEKEQHAAIAALVGLLSENPSRALAVADVEKNAVEVLCRILSSSCSMDLKGDAAELCCALFGNTRIRSTAAAASCVEPLVSLLVSEFSPAQLSVVRALDRLVDDEQLAELVAAHGAVVPLVGLLSGTNYILHEAISRALVKLGKDRPACKMEMVKAGVIESVLDILHEAPDYLCAAFAELLRILTNNASIAKGPSAGKVVEPLFLLLTRQEFGPDGQHSALQVLVNILEHPKCRADHSLTSRQVIEPLIPLLDSSISAVQQLAAELLSHLLLEERLQKDPVTQQAIGPLIRVLGSGIHILQQRAVKALVSIALTWPNEIAKEGGVIEISKVILQADPSLPHALWESAASVLSSILQFSSEFYLEVPIAVLVRLLRSGSESTVVGALNALLVLENDDGTSAEAMSESGAIEALLELLRSHQCEETAARLLEVLLNNVKIRETKVTKSAIVPLSQYLLDPQTQAQQARLLATLALGDLFQNEGLARTSDAVSACRALVNVLEDQPTEEMKVVAICALQNLVMYSRSNRRAVAEAGGVQVVLDLIGSSNPETSVQAAMFVKLLFSNNTIQEYASSETVRAITAAIEKDLWASGTVNDEYLKALNSLFSNFPRLRATEPSTLSIPHLVTALKTGSEACQEAALDALFLLRQAWSACPAEVSRAQSIAAADAIPLLQYLIQSGPPRFQEKAEFLLQCLPGTLVVIIKRGNNMKQSVGNPSVYCKLTLGNTPPRQTQVVSTGPNPEWDESFSWTFESPPKGQKLHISCKNKSKVGKSKFGKVTIQIDRVVMLGSVAGEYALLPQSKSGPPRNLEIEFQWSNK 2146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03572 2146 PANTHER PROTEIN CELLULOSE SYNTHASE INTERACTIVE 1 24 2146 IPR044297 GO:0008017|GO:0010330|GO:0051211|GO:2001006
Vian1g03572 2146 SMART C2_3c 2026 2122 IPR000008 -
Vian1g03572 2146 Gene3D - 1812 2021 IPR011989 -
Vian1g03572 2146 Gene3D - 43 410 IPR011989 -
Vian1g03572 2146 Gene3D - 411 645 IPR011989 -
Vian1g03572 2146 ProSiteProfiles C2 domain profile. 2006 2123 IPR000008 -
Vian1g03572 2146 Pfam Armadillo/beta-catenin-like repeat 520 559 IPR000225 GO:0005515
Vian1g03572 2146 Pfam Armadillo/beta-catenin-like repeat 99 129 IPR000225 GO:0005515
Vian1g03572 2146 SUPERFAMILY ARM repeat 1402 1651 IPR016024 -
Vian1g03572 2146 Gene3D - 646 791 IPR011989 -
Vian1g03572 2146 Gene3D - 1695 1811 IPR011989 -
Vian1g03572 2146 Gene3D - 793 1176 IPR011989 -
Vian1g03572 2146 Coils Coil 292 319 - -
Vian1g03572 2146 SUPERFAMILY ARM repeat 572 1123 IPR016024 -
Vian1g03572 2146 SUPERFAMILY ARM repeat 1181 1440 IPR016024 -
Vian1g03572 2146 Gene3D - 1400 1691 IPR011989 -
Vian1g03572 2146 Gene3D - 1177 1399 IPR011989 -
Vian1g03572 2146 SMART arm_5 89 130 IPR000225 GO:0005515
Vian1g03572 2146 SMART arm_5 728 766 IPR000225 GO:0005515
Vian1g03572 2146 SMART arm_5 562 602 IPR000225 GO:0005515
Vian1g03572 2146 SMART arm_5 1564 1602 IPR000225 GO:0005515
Vian1g03572 2146 SMART arm_5 520 560 IPR000225 GO:0005515
Vian1g03572 2146 SMART arm_5 1224 1265 IPR000225 GO:0005515
Vian1g03572 2146 SMART arm_5 477 518 IPR000225 GO:0005515
Vian1g03572 2146 SMART arm_5 1434 1474 IPR000225 GO:0005515
Vian1g03572 2146 SMART arm_5 1307 1347 IPR000225 GO:0005515
Vian1g03572 2146 SMART arm_5 306 355 IPR000225 GO:0005515
Vian1g03572 2146 SMART arm_5 1725 1764 IPR000225 GO:0005515
Vian1g03572 2146 SMART arm_5 812 854 IPR000225 GO:0005515
Vian1g03572 2146 SMART arm_5 1852 1892 IPR000225 GO:0005515
Vian1g03572 2146 SMART arm_5 131 171 IPR000225 GO:0005515
Vian1g03572 2146 SMART arm_5 1476 1516 IPR000225 GO:0005515
Vian1g03572 2146 SMART arm_5 1393 1433 IPR000225 GO:0005515
Vian1g03572 2146 SMART arm_5 263 304 IPR000225 GO:0005515
Vian1g03572 2146 SUPERFAMILY ARM repeat 423 728 IPR016024 -
Vian1g03572 2146 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 531 573 IPR000225 GO:0005515
Vian1g03572 2146 SUPERFAMILY ARM repeat 1672 2023 IPR016024 -
Vian1g03572 2146 SUPERFAMILY ARM repeat 60 388 IPR016024 -
Vian1g03572 2146 FunFam Protein CELLULOSE SYNTHASE INTERACTIVE 1 2025 2146 - -
Vian1g03572 2146 FunFam Coatomer beta subunit 1611 2024 - -
Vian1g03572 2146 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2025 2128 IPR035892 -
Vian1g03572 2146 MobiDBLite consensus disorder prediction 1 36 - -
Vian1g03572 2146 CDD C2 2027 2117 - -
Vian1g03572 2146 Gene3D C2 domain 2023 2146 IPR035892 -
Vian1g03572 2146 FunFam Protein CELLULOSE SYNTHASE INTERACTIVE 1 1375 1609 - -
Vian1g03572 2146 Pfam C2 domain 2025 2114 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03572 Vian-Chr1 58409806 58424815 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03572 491 615 U-box Gene Family AT3G46510 32.540 3.88e-07 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03572 - - gmx:100794002 3817.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g03572 1 58409806 58424815 Vian1g03572 1 58409806 58424815 ECH
Vian1g03572 1 58409806 58424815 Vian2g03070 2 51287192 51298232 PCT