Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03565 ATGAACAAATTAGATACTAGTGTGGTGCCACCTCTTATGTATGCTTTGATGGGAACTTCAAGAGAGATAGCGATTGGACCAGTGGCGGTGGTGTCTCTTCTTTTGTCATCAATGGTTGAGAAATTAATAGACCCTGCCATTGATCCAAATGGGTATAGAAAGCTTGTGTTCACTGCCACTTTCTTTGCTGGTATATTTCAAGCTGCTTTTGGACTGTTCAGGTTGGGTTTCCTTGTGGATTTTGTGTCTCATGCAGCCATTGTTGGATTCATGGGAGGAGCAGCAATAATAATTGGTCTTCAACAGCTGAAGGGACTGTTTGGAATAAATCATTTTACAAACAAAACAGACATAATCTCTGTCATGAAATCCGTTCGGGAATCGCTTCATCATACCTGGAATCCGCTCAACTTTGTGCTGGGATGTTCGTTCTTCATTTTCATCCTGGTTACCAGATTTCTGGGTAAAAGGAATAAGAAACTGTTTTGGCTGCCAGCTATATCTCCTCTTTTATCAGTTCTGTTATCAACTCTTATAGTTTTCCTGACTAGAGCTGACAAAAGTGGTGTTAACATTGTGAGACATATAAAAGGAGGATTGAATCCAAGCTCTATCAATCAAATAGAGTTGAATTCCCCACATATTGGAGCATTGGCCAAAACTGGACTATTTGCTGCTGCTGTTGCACTCACTGAATCAGTTGCTGTTGGACGATCTTTTGCATCCATGAAAGGATATCACCTTGACGGAAACAAGGAAATGGTATCATTAGGCTTCATGAACATCATAGGATGCATCTCCTCTTGCTATGTTGCAACTGGTTCTTTCTCCCGCACAGTGGTTAATTTCACCGCGGGTTGTGAAACATTAGCGTCAAACATTGTGATGTCCATTGTAGTGATCATATCACTGCAATGTTTGACGAAGCTATTGTATTTTACACCAACTGCTATTCTGGCTTCGATAATCCTTTCAGCTCTGCCGGGACTCATAGACATCAACGAAGCTTACAAAATATGGAAAGTTGATAAGCTTGATTTTCTTGCTTGTGTTGGAGCCTTCTTCGGTGTGATCTTTGCGTCAGTGGAACTTGGTCTGCTAGTGGCCGTGGCAATATCTTTGACAAAGATAATTTGGATCTCGATCGGAGCAGGCACAGAAACGCTGGGAAGACTTCCAGGCACAGATCTGTTCTGCGATGTACAACAGTATCCTATGGCTGTTAAGACTCCTGGGGTTGCAATAATACGCGTCAAGTCTGCATTGCTTTGCTTTTCTAATGCCAATTCAGTCAGAGAGAGGATCCTGAAATGGATCACTCGGGAAGATGCAAAGGGGAAAATAGAAGGCACCACCGGAAGCATAGTTCAGCTCGTAATCCTTGATACCTCTAATTTGGTGAGCATTGACACCTCAGGAATTGCTTCGCTAGAGGAACTGCATGAGAGTTTGGTTTCAAGTGGAAAGCAGCTAGCAATTGCCAATCCTGGGTGGCAAGTGATTTACAAGCTAAAGGCAACCAACTTTGTTGCAAGAATTGGAGGAAGGGTCTTCTTGACTATTGGAGAAGCTATTGACTGCAATCTGGATTTCTAA 1596 0.4242 MNKLDTSVVPPLMYALMGTSREIAIGPVAVVSLLLSSMVEKLIDPAIDPNGYRKLVFTATFFAGIFQAAFGLFRLGFLVDFVSHAAIVGFMGGAAIIIGLQQLKGLFGINHFTNKTDIISVMKSVRESLHHTWNPLNFVLGCSFFIFILVTRFLGKRNKKLFWLPAISPLLSVLLSTLIVFLTRADKSGVNIVRHIKGGLNPSSINQIELNSPHIGALAKTGLFAAAVALTESVAVGRSFASMKGYHLDGNKEMVSLGFMNIIGCISSCYVATGSFSRTVVNFTAGCETLASNIVMSIVVIISLQCLTKLLYFTPTAILASIILSALPGLIDINEAYKIWKVDKLDFLACVGAFFGVIFASVELGLLVAVAISLTKIIWISIGAGTETLGRLPGTDLFCDVQQYPMAVKTPGVAIIRVKSALLCFSNANSVRERILKWITREDAKGKIEGTTGSIVQLVILDTSNLVSIDTSGIASLEELHESLVSSGKQLAIANPGWQVIYKLKATNFVARIGGRVFLTIGEAIDCNLDF 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03565 531 Pfam STAS domain 404 524 IPR002645 -
Vian1g03565 531 CDD STAS_SulP_like_sulfate_transporter 404 519 - -
Vian1g03565 531 Gene3D STAS domain 385 528 IPR036513 -
Vian1g03565 531 Pfam Sulfate permease family 4 351 IPR011547 GO:0016020
Vian1g03565 531 NCBIfam sulfate permease 6 517 IPR001902 GO:0016020|GO:0055085
Vian1g03565 531 PANTHER SULFATE TRANSPORTER 6 526 IPR001902 GO:0016020|GO:0055085
Vian1g03565 531 ProSiteProfiles STAS domain profile. 423 528 IPR002645 -
Vian1g03565 531 SUPERFAMILY SpoIIaa-like 408 526 IPR036513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03565 Vian-Chr1 58366835 58372157 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03565 4 526 Inorganic Solute Cotransporters AT5G10180 68.069 0.0 740
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03565 K17469 - gmx:100775538 934.865