Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03533 ATGGCTGAGGCCAGACAGTACTTTCCCCCCTCTCAATTGGATATCAAGCAAATTATCGTGGAAGCACAGCATCGATGGCTGCGTCCGGCGGAAATTTGTGCAATTCTCAGCAACTATAAGAAGTTTCGAATTGCTCCAGAACCTGCTACTATGCCACCAAGTGGTTCACTTTTCTTATTTGATCGGAAGGTGCTGAGATACTTCAGAAAGGATGGCCACAACTGGAGGAAGAAAAAAGATGGAAAAACAGTAAGAGAAGCACATGAGAGACTAAAGGCTGGAAGTGTGGATGTGTTGCACTGCTATTATGCTCATGGAGAAGAAGATGAGAGTTTTCAGAGACGCACATATTGGCTGCTTGAAGAGGAACACTCTAACATTGTTCTAGTTCATTATCGACAAGTGAAGGGAACCAAGGCAAATTATACGTGTGCTAAAGAAAATGAAGAATCTCTTCCTTGTGCTGAACAAACTGACAAAATTATGCTCAAAGCAGAGATGGACACTTCTTTTTCGTCCGCTCTTCATCCAAACAGTTACCAGGTTCCTTCACAAACTATGGATTCAAGCATGAACAGTGCCCAAGTATCAGAATATGAGGAAGCTGAATCTGCATTCAATAGCCATGCAAGTTCTGAGTTTTATTCTTTCCTTGAGTTACAACGCCCTGTTGAGAAGATTATAGATCAACCTGCTGATTCTTATTCTCCTCACCCACTCATAAATGAGCAAAAGAAGTTACCTGTCATTGCTGATATGAATTATATCTCACTCACCCAAGACAGAAAATTCATAGACATTCATAATGGTGGATTGATATATGAATCCCCAAAACCCCTGGGATTTTCCTCATGGGAAGATATCTTAGAAAATAATGGTGAAAGTCAACACATGCCTTTTCAGCCTTTATTTCCTGAAATGCAACCTGATGAAATGGCAGTCAATAGCAGTTTTTGTCAAGGATATGACATAATGGTGCCACATTTGACCACCAGCATTGCTAAGCTGCATGACAATGGAAGTCTCATACAAGCTGAAGGAAGTTGGCAGGGATATAGTGTTGATTCTTTACGTGTGTCCAGTTGGCCTATAGATAATGTCCATTCAAGCTCAACATGTGAGGTTAGTTGTAGCAACTGTGAGCATGAAGTTAATGAAGTTGATATTCAGAAATCCTTGCAACAGTCTCTTCTCCATCAACACAAACAAAACAAGGTTCTCATGCAAAATGATCCTCAAGAGATAATGCTTGATTATCTAAAATCAGATTTTGAGGCCAGTAGAACCCTGGATGGAATAGAAGACCCACGTTTCACTTTTAAAAGGACTCTGTTAGATGGATCCCCAGCAGAAGAGGGTCTGAAGAAGCTTGACAGTTTCAACCAATGGATGAGTAAAGAGCTTGGAGATGTGGAAGAATCAAATAAACCATCTACTTCTGGTGCTTATTGGGATACAGTTGAAAGTGAAAGTGAGGTTGGCAGCACAACTATTCCTTCCCAAGGGCACCTAGACACCTATGTATTGGATCCATCTGTTTCCAATGAGCAGCTTTTTAGCATTATTGACTATTCACCAAGCTGGGCATTTGAAGGGTCAGAAGTTAAGATTATCATTTCTGGACGATTCTTAAGAAGCCAACAAGAAGCAGAACAATGTAAATGGTCATGCATGTTTGGTGAGGTAGAAGTGCCAGCAGTGATACTTGCAAAAGATGTTCTTTGCTGTCATACTCCTCTGCACAAGGCTGGGAGGGTACCTTTCTATGTAACTTGTTCCAATAGGTTAGCATGCAGTGAAGTCCGAGAATTTGATTTCCAGGTCAACTGTACTCAAGAAGTCAACACTGCAGGTGAGGATAGAGCCATCGTTTTTCATACTCTTAGTAGACGATTTGGAGAACTGTTGTCCCTGGGGCATGCCGTTCCTCAGAATTCAGATTCAATCAGCGAAAATGAGAAATCTGAACTGAGAAGTAAAATCAGTTCTTTGCTAAGGGGGGAGGATGATGTTTGGGACAAGCTACTGGAACTTACTCAAGAGAAAGATATTTCTCCAGAAGATTTACAGGAGCAGCTGCTTCAAAATCTTCTAAAAGATAAGTTGCACGCATGGCTCCTTCAGAAAATTACAGACGATGGAAAAGGCCCCAATGTATTGGATGAGGGTGGCCAAGGTGTGCTTCATTTTGCTGCTGCTCTTGGCTACGATTGGGCACTAGAACCCACACTAGTTGCTGGTGTGAATGTGAACTTTCGTGACATAAATGGATGGACTGCTCTTCATTGGGCAGCATTTTATGGCAGGGAGCGCACGGTTGCTTTCCTCATATCCCTTGGCGCAGCACCTGGATTACTGACTGACCCATGTCCAGAACATCCTTCTGGTAGAACACCGGCTGATCTAGCTTCTACAAACGGGCATAAAGGAATTGCAGGGTATCTCGCAGAATCTTCACTAAGTGCACAGCTCACTACTCTTGATTTGAACAAGGATGTGGGAGAAAATTCGGGAAACAAAGTGGTCCAAAGAATCCAAGACATTGCCCCAGTTAATGATCTTGATGTTCTATCATATGAACAGTCACTGAAAGATTCATTGGCTGCAGTGTGCAATGCCACCCAAGCTGCGGCTCGTATTCATCAAGTCTTCAGAATGCAATCATTCCAGAGAAAGCAGCTGAAGGAATTTGGTGATGACAAATTTGGAATATCTGACGAACGTGCTCTTTCACTTGTAAAAAAGAATGGGAAATCACACAAGTCTGGATCACGTGATGAGCCGGTCCATGCTGCTGCAATACGTATCCAGAACAAATTCCGCGGTTGGAAGGGAAGAAAAGATTTTTTGATGATTCGACAACGTATAGTAAAAATTCAGGCTCACGTGAGAGGACACCAGGTTAGGAAAAATTGTGGGAAGATAATTTGGTCTGTTGGGATATTGGAGAAAGTTATTTTGCGTTGGCGTCGAAAAGGTAGTGGTTTGCGAGGATTTAAATCAGAGGCCAATTCTGAAGTAACTATGATAGAAGATGTAACATCCTCTGAGGATCACTATGATGTCTTAAAAGAAGGCAGGAAGCAAACAGAGCAAAGATTGCAGAAAGCCCTGGCCAGGGTGAAGTCAATGATTCAGTATCCAGAGGCAAGGGACCAATACCATAGGGTGTTGAATGTGGTAACTCAGATCCAAGACAATCAGGTAAAGCATGATAGCAGTTGTAACAATTCAGAAGAAATAAGAGACTTCAATAACCTCACTGATCTTGAAGCACTGTTGGACGAAGATATTTTCATGCCTACAGCAACTTAG 3315 0.4211 MAEARQYFPPSQLDIKQIIVEAQHRWLRPAEICAILSNYKKFRIAPEPATMPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVREAHERLKAGSVDVLHCYYAHGEEDESFQRRTYWLLEEEHSNIVLVHYRQVKGTKANYTCAKENEESLPCAEQTDKIMLKAEMDTSFSSALHPNSYQVPSQTMDSSMNSAQVSEYEEAESAFNSHASSEFYSFLELQRPVEKIIDQPADSYSPHPLINEQKKLPVIADMNYISLTQDRKFIDIHNGGLIYESPKPLGFSSWEDILENNGESQHMPFQPLFPEMQPDEMAVNSSFCQGYDIMVPHLTTSIAKLHDNGSLIQAEGSWQGYSVDSLRVSSWPIDNVHSSSTCEVSCSNCEHEVNEVDIQKSLQQSLLHQHKQNKVLMQNDPQEIMLDYLKSDFEASRTLDGIEDPRFTFKRTLLDGSPAEEGLKKLDSFNQWMSKELGDVEESNKPSTSGAYWDTVESESEVGSTTIPSQGHLDTYVLDPSVSNEQLFSIIDYSPSWAFEGSEVKIIISGRFLRSQQEAEQCKWSCMFGEVEVPAVILAKDVLCCHTPLHKAGRVPFYVTCSNRLACSEVREFDFQVNCTQEVNTAGEDRAIVFHTLSRRFGELLSLGHAVPQNSDSISENEKSELRSKISSLLRGEDDVWDKLLELTQEKDISPEDLQEQLLQNLLKDKLHAWLLQKITDDGKGPNVLDEGGQGVLHFAAALGYDWALEPTLVAGVNVNFRDINGWTALHWAAFYGRERTVAFLISLGAAPGLLTDPCPEHPSGRTPADLASTNGHKGIAGYLAESSLSAQLTTLDLNKDVGENSGNKVVQRIQDIAPVNDLDVLSYEQSLKDSLAAVCNATQAAARIHQVFRMQSFQRKQLKEFGDDKFGISDERALSLVKKNGKSHKSGSRDEPVHAAAIRIQNKFRGWKGRKDFLMIRQRIVKIQAHVRGHQVRKNCGKIIWSVGILEKVILRWRRKGSGLRGFKSEANSEVTMIEDVTSSEDHYDVLKEGRKQTEQRLQKALARVKSMIQYPEARDQYHRVLNVVTQIQDNQVKHDSSCNNSEEIRDFNNLTDLEALLDEDIFMPTAT 1104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03533 1104 ProSiteProfiles CG-1 DNA-binding domain profile. 15 141 IPR005559 GO:0003677
Vian1g03533 1104 Pfam CG-1 domain 21 134 IPR005559 GO:0003677
Vian1g03533 1104 SUPERFAMILY E set domains 521 606 IPR014756 -
Vian1g03533 1104 SUPERFAMILY Ankyrin repeat 701 817 IPR036770 -
Vian1g03533 1104 Pfam IQ calmodulin-binding motif 930 949 IPR000048 GO:0005515
Vian1g03533 1104 Pfam IQ calmodulin-binding motif 954 971 IPR000048 GO:0005515
Vian1g03533 1104 Gene3D - 927 975 - -
Vian1g03533 1104 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 13 1067 - -
Vian1g03533 1104 SMART CG_1_2 18 136 IPR005559 GO:0003677
Vian1g03533 1104 ProSiteProfiles Ankyrin repeat profile. 756 788 IPR002110 GO:0005515
Vian1g03533 1104 ProSiteProfiles IQ motif profile. 952 976 IPR000048 GO:0005515
Vian1g03533 1104 Gene3D Immunoglobulins 513 610 IPR013783 -
Vian1g03533 1104 Coils Coil 1020 1040 - -
Vian1g03533 1104 Gene3D - 679 844 IPR036770 -
Vian1g03533 1104 ProSiteProfiles IQ motif profile. 930 958 IPR000048 GO:0005515
Vian1g03533 1104 SMART ANK_2a 756 785 IPR002110 GO:0005515
Vian1g03533 1104 SMART ANK_2a 795 824 IPR002110 GO:0005515
Vian1g03533 1104 FunFam Calmodulin-binding transcription activator 2 685 832 - -
Vian1g03533 1104 Pfam IPT/TIG domain 521 595 IPR002909 -
Vian1g03533 1104 Pfam Ankyrin repeats (3 copies) 728 823 IPR002110 GO:0005515
Vian1g03533 1104 FunFam Calmodulin-binding transcription activator 2 514 610 - -
Vian1g03533 1104 FunFam Calmodulin-binding transcription activator 2 928 976 - -
Vian1g03533 1104 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 923 978 IPR027417 -
Vian1g03533 1104 ProSiteProfiles Ankyrin repeat region circular profile. 756 781 - -
Vian1g03533 1104 SMART iq_5 951 973 IPR000048 GO:0005515
Vian1g03533 1104 SMART iq_5 928 950 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03533 Vian-Chr1 57976716 57982726 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03533 1 1085 CAMTA Transcription Factor Family AT5G64220 45.966 0.0 857
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Vian1g03533 Ank_2 9.8e-09 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03533 K21596 - gmx:100798875 1857.03