Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03528 ATGCCAAACACCACTCAGCAGTTCCCAATCAACAACATCAACTTCAACAACGATTCCCTGCATGTCTCCCTTCGCAACCTCTCCCAACTCAGCACACGAATGGATTCGCTTCAGAGCTTTGTCTCCCAATCCATTCAATCTCACACTCTCCTCACACACCACCAAATGAACATCGTATCCAACGAGATCCTAACCGCAATTCGCCACGTCATCACCAACGGCGCAGCCTTAGTCGCAGCGTCGGAGGACGTGCTTTCCCTTTCGGAGACTCCCACGTCGGAATACTCTCCCAACCCAAATACCAACCAAACAAACGTGGTGGAGCTGGACGCGATGGAACTCCTGGCGCAGCACCTCCACTTCTGCGAGGTGTGCGGGAAGGGCTTCACGCGCGACGCCAACCTTAGGATGCACATGCGCGCCCACGGGGACGAGTTCAAGACTGCGGACGCGCTCGCGAGCAGGGCGCGTGGCGAGACGCGTGGGAAAACGACGCGGTTCTCGTGCCCCTTCGAAGGATGCAACCGCAACAAGACGCACAAGAAGTTCAGGCCGTTGAAGTCGGTGTTCTGTCTGAGGAACCACTTCAAGAGGAGTCACTGTCCCAAAACGTTGTCGTGCGAGCGGTGTCGGAAGAAGAGCTTCGCGGTGCTCTCGGACTTGAAGAGTCACATGAAACAATGTCGGGGAGAGGCCACGTGGAAGTGCTCGTGCGGAACCACGTTTTCGCGGAAGGACAAGCTGTTCGGACACGTGGCGCTGTTCGAGGGGCATTTGCCTATGCTTGAAGAGGAGAAGGAGACCTCGGCGGTGGCGGCGGCGGCGGCGGCGGTGGAAGGGTTGGTGAAGGAAAGTGACGGTGGTTTGGATGGGTTACCTGAAGGGTTCTTTGATGGGTTGGACGAATTTGGGTTTGGTTCCACTGAAAGCACCTCTTCACCGGAAGAAACTTCGCCTTGGGGTTTCCCACAAATGGAAACTCATTTCTAA 990 0.5606 MPNTTQQFPINNINFNNDSLHVSLRNLSQLSTRMDSLQSFVSQSIQSHTLLTHHQMNIVSNEILTAIRHVITNGAALVAASEDVLSLSETPTSEYSPNPNTNQTNVVELDAMELLAQHLHFCEVCGKGFTRDANLRMHMRAHGDEFKTADALASRARGETRGKTTRFSCPFEGCNRNKTHKKFRPLKSVFCLRNHFKRSHCPKTLSCERCRKKSFAVLSDLKSHMKQCRGEATWKCSCGTTFSRKDKLFGHVALFEGHLPMLEEEKETSAVAAAAAAVEGLVKESDGGLDGLPEGFFDGLDEFGFGSTESTSSPEETSPWGFPQMETHF 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03528 329 FunFam B-cell CLL/lymphoma 6, member B 119 142 - -
Vian1g03528 329 Pfam Zinc-finger of C2H2 type 121 140 - -
Vian1g03528 329 SMART c2h2final6 167 200 IPR013087 -
Vian1g03528 329 SMART c2h2final6 120 142 IPR013087 -
Vian1g03528 329 SMART c2h2final6 205 226 IPR013087 -
Vian1g03528 329 SUPERFAMILY beta-beta-alpha zinc fingers 118 145 IPR036236 -
Vian1g03528 329 ProSitePatterns Zinc finger C2H2 type domain signature. 122 142 IPR013087 -
Vian1g03528 329 Gene3D Classic Zinc Finger 158 256 - -
Vian1g03528 329 MobiDBLite consensus disorder prediction 307 329 - -
Vian1g03528 329 ProSiteProfiles Zinc finger C2H2 type domain profile. 120 147 IPR013087 -
Vian1g03528 329 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 98 274 IPR044300 GO:0010044|GO:0010447
Vian1g03528 329 Gene3D Classic Zinc Finger 120 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03528 Vian-Chr1 57939544 57940533 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03528 106 280 C2H2 Transcription Factor Family AT1G34370 55.801 3.72e-71 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vian1g03528 zf-met 0.0014 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03528 - - vum:124823301 590.882