Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03522 ATGGCAATAACACCTTTTAGTAGTACATCTACTGCACAATGGGGAATTCATCCTCAGCTGTTTGTAAGATCCAGTATTACAGGCAAGGTTGCATCATCCAGCCACAATGTTACCAGCAGGGTAAGCTTCATGGCTGCATCAAGTTCAAGCTTTTTTTCTCGAGATTCCACACTACTCAATGTGGCTGCACCCCAAACTTTTAATCATCGCAAGGGATCAAGGTTGATTGTTAGAGCTGATGCAGATTATTATTCTGTCCTTGGGGTTTCAAGAAATGCTAACAAATCTGAAATTAAGAGCGCGTATCGGAAGCTTGCCCGGAATTATCATCCGGATGTCAACAAAGAACCTGGAGCTGACCAAAAGTTTAAAGAAATCAGCAACGCATATGAGGTGTTATCAGATGATGAGAAACGATCCATATATGACAGATTTGGAGAGGCTGGACTTAAAGGTTCTGGAATGGGGATGGGGGATTTCAGCAATCCATTTGATCTGTTCGAATCATTGTTTGAAGGCATGAATCGCGGTGGAGGTTCGAGAGGTTCTTGGAACGGTGCAATTGATGGTGAAGATGAGTATTACAGTCTTGTTTTGAACTTTAAAGAAGCAGTTTTTGGCATAGAAAAGGAGATAGAGATAAGCCGATTAGAGAGCTGCGGAACTTGCAATGGCTCAGGGGCTAAACCAGGGACTACACCAACCAAATGTAGCACTTGCGGAGGTCAAGGACGGGTTGTCTCTTCAACAAGAACTCCGTTAGGTATCTTCCAGCAGTCAATGACATGCTCTTCATGCAATGGGAGGGGCGAAATTTCAACACCTTGCAATACATGTTCTGGGGATGGTCGGGTGAGGAAATCGAAGAGGATAAGTCTGAAGGTCCCAGCTGGTGTGGACTCTGGTAGTCGTCTAAGGGTCCGAAATGAGGGGAATGCTGGAAGGAGAGGTGGTTCCCCTGGCGACCTCTTCGTAGTTATTGAGGTTATCCCAGATCCTGTCCTTAAACGAGATGACACTAACATTTTGTACGCCTGCAAGGTTTCGTATATTGATGCAATCCTGGGGACTACAACTAAGGTTCCTACTGTAGACGGAACGGTGGACTTAAAAATTCCTGCTGGGACACAACCCAACACAACACTTGTTATGGCTAAGAAAGGTGTTCCCTTCCTTAATAAAAACAATATGAGAGGTGATCAGTTGGTTCGTGTGCAAGTTGAAATCCCTAAAAGACTCAACAATGATGAGAGAAAGCTTATTGAGGAACTTGCTCATTTAAGCAAAGGCAAGACTACCACAGGTAGGAGATAG 1314 0.4429 MAITPFSSTSTAQWGIHPQLFVRSSITGKVASSSHNVTSRVSFMAASSSSFFSRDSTLLNVAAPQTFNHRKGSRLIVRADADYYSVLGVSRNANKSEIKSAYRKLARNYHPDVNKEPGADQKFKEISNAYEVLSDDEKRSIYDRFGEAGLKGSGMGMGDFSNPFDLFESLFEGMNRGGGSRGSWNGAIDGEDEYYSLVLNFKEAVFGIEKEIEISRLESCGTCNGSGAKPGTTPTKCSTCGGQGRVVSSTRTPLGIFQQSMTCSSCNGRGEISTPCNTCSGDGRVRKSKRISLKVPAGVDSGSRLRVRNEGNAGRRGGSPGDLFVVIEVIPDPVLKRDDTNILYACKVSYIDAILGTTTKVPTVDGTVDLKIPAGTQPNTTLVMAKKGVPFLNKNNMRGDQLVRVQVEIPKRLNNDERKLIEELAHLSKGKTTTGRR 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03522 437 PRINTS DnaJ domain signature 102 117 IPR001623 -
Vian1g03522 437 PRINTS DnaJ domain signature 84 102 IPR001623 -
Vian1g03522 437 PRINTS DnaJ domain signature 118 138 IPR001623 -
Vian1g03522 437 PRINTS DnaJ domain signature 138 157 IPR001623 -
Vian1g03522 437 SUPERFAMILY HSP40/DnaJ peptide-binding domain 335 421 IPR008971 GO:0006457|GO:0051082
Vian1g03522 437 SUPERFAMILY Chaperone J-domain 79 179 IPR036869 -
Vian1g03522 437 FunFam Putative Mitochondrial DnaJ chaperone 276 325 - -
Vian1g03522 437 Gene3D - 330 436 - -
Vian1g03522 437 ProSiteProfiles dnaJ domain profile. 82 146 IPR001623 -
Vian1g03522 437 Pfam DnaJ central domain 220 283 IPR001305 GO:0031072|GO:0051082
Vian1g03522 437 ProSiteProfiles Zinc finger CR-type profile. 207 288 IPR001305 GO:0031072|GO:0051082
Vian1g03522 437 NCBIfam molecular chaperone DnaJ 82 426 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Vian1g03522 437 Pfam DnaJ C terminal domain 195 410 IPR002939 -
Vian1g03522 437 Gene3D DnaJ domain 79 183 IPR036869 -
Vian1g03522 437 FunFam Molecular chaperone DnaJ 212 288 - -
Vian1g03522 437 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 42 432 - -
Vian1g03522 437 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 207 287 IPR036410 -
Vian1g03522 437 CDD DnaJ_C 191 413 - -
Vian1g03522 437 Pfam DnaJ domain 82 143 IPR001623 -
Vian1g03522 437 SUPERFAMILY HSP40/DnaJ peptide-binding domain 188 343 IPR008971 GO:0006457|GO:0051082
Vian1g03522 437 FunFam Chaperone protein dnaJ A6 chloroplastic 79 182 - -
Vian1g03522 437 SMART dnaj_3 81 138 IPR001623 -
Vian1g03522 437 Gene3D - 190 325 - -
Vian1g03522 437 FunFam Chaperone protein dnaJ 1, mitochondrial 330 437 - -
Vian1g03522 437 ProSitePatterns Nt-dnaJ domain signature. 123 142 IPR018253 -
Vian1g03522 437 Gene3D - 220 283 - -
Vian1g03522 437 CDD DnaJ 82 135 IPR001623 -
Vian1g03522 437 CDD DnaJ_zf 220 283 IPR001305 GO:0031072|GO:0051082
Vian1g03522 437 Hamap Chaperone protein DnaJ [dnaJ]. 79 433 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03522 Vian-Chr1 57880261 57887216 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03522 82 160 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT5G64360 41.250 2.43e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03522 K03686 - gmx:100811006 814.683