Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vian1g03517 | ATGGAAGGAGACGTAGACATGTCCGCCGCCGACGATGACGCCGCCGTCAAGGAGCTCGACGAGATGAAGCGCCGATTGAAGGAGATGGAGGAGGAAGCCGCAGCGCTTCGCGAGATGCAAGCCAAGGTCGAGAAGGAAATTGGCAGTGTTCAAGATCCTGCTAATGCAGCTGCTTCTCAAGCAAACAAGGAGGAGGCAGATTCTCGGTCTGTTTTTGTTGGCAATGTTGATTATGCATGCACACCAGAAGAAGTGCAGCAACACTTTCAATCCTGTGGTACTGTGAACAGGGTCACTATCTTGACAGACAAGTTTGGCCAGCCTAAAGGTTTTGCTTATGTGGAATTTGTTGAAGTTGAAGCTGTTCAAGAGGCTCTCGTCTTGAATGAATCTGAACTGCATGGCAGGCAACTGAAGGTTTTACCTAAGAGGACCAATGTCCCTGGAATGAAACAACATCGTCCTAGACGGTTTAATCCTTACATGGCATACGGCTTCAGGAGGCCATATACTCCTCCTTACTTTTACTCCCCTTATGGATATGGGAAGGTTCCTAGGTTTAGAAGGCCAAATCGTTACATGCCGTACTACTAG | 594 | 0.4832 | MEGDVDMSAADDDAAVKELDEMKRRLKEMEEEAAALREMQAKVEKEIGSVQDPANAAASQANKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEVEAVQEALVLNESELHGRQLKVLPKRTNVPGMKQHRPRRFNPYMAYGFRRPYTPPYFYSPYGYGKVPRFRRPNRYMPYY | 197 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vian1g03517 | 197 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 69 | 145 | IPR000504 | GO:0003723 | |
| Vian1g03517 | 197 | SUPERFAMILY | RNA-binding domain, RBD | 59 | 165 | IPR035979 | GO:0003676 | |
| Vian1g03517 | 197 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H | 13 | 156 | - | - | |
| Vian1g03517 | 197 | MobiDBLite | consensus disorder prediction | 45 | 66 | - | - | |
| Vian1g03517 | 197 | Gene3D | - | 7 | 141 | IPR012677 | - | |
| Vian1g03517 | 197 | Coils | Coil | 12 | 46 | - | - | |
| Vian1g03517 | 197 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 71 | 139 | IPR000504 | GO:0003723 | |
| Vian1g03517 | 197 | FunFam | Polyadenylate-binding protein 1 | 7 | 141 | - | - | |
| Vian1g03517 | 197 | CDD | RRM_II_PABPs | 70 | 141 | - | - | |
| Vian1g03517 | 197 | SMART | rrm1_1 | 70 | 141 | IPR000504 | GO:0003723 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vian1g03517 | Vian-Chr1 | 57847936 | 57852817 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vian1g03517 | 66 | 140 | Eukaryotic Initiation Factors Gene Family | AT2G36660 | 34.211 | 2.07e-09 | 54.3 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vian1g03517 | K14396 | - | gmx:100789721 | 353.214 |