Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03508 ATGAAGAGACTTGGCAGCTCCGATTCTCTGGGTGCTCTCATGACCATTTGTCCACCAACAGACGAACACAGTCCGAGGAACAACCACGTGTATGGCAGGGAGTTCCAGTCTATGTTGGAAGGACTAGACGATGAAGGGTGTGTGGAGGAACCAGGACACCACGCCGAGAAGAAACGAAGACTGAGCGTGGATCAGGTGAAAGCTTTGGAGAAGAACTTCGAAGTAGAGAACAAACTCGAACCTGACAGAAAGGTGAAGCTGGCACAAGAACTTGGCTTGCAACCAAGACAAGTTGCGGTTTGGTTCCAAAACCGTCGAGCCAGATGGAAAACGAAGCAATTGGAAAGAGACTATGGAGTCCTCAAAGCCAATTATGATTCCCTCAAACTTAATTACGACACCCTTCAACAAGACAACGAAGCCTTACTCAAAGAGATAAAGGAATTGAAATCAAGGTTGCTGCTGCAAGAAGAGAGCAACACTGAAAGCGATGTTTCGGTGAAGGAAGAGATGATAACACTGCAAGATAGTAACCCACTTTGTGAAACCGCCATTCCTGGATCCGAATCTAAGGAGTTGAGTTACGAATGCTTCAACAAGAGTGATGAAGTTTTAGGGGCTTTCAAAGACGGGTCTTCCGACAGCGACTCCAGCGCGATCTTGAACGAAGAGAATGCCAACAACAACGACAACAGTCCCAAGAACGGGACGATTTCGTCTTCTGGGGTTATGCAAAGTCAGAGCTTTTTGTCATCGTCTTCTCCGATGAACTGTTTCCAGTTCCAGAAACAGTTTCCGACGCAGTACGTGAAGATGGAGGAGCATAATTTTCTGAGCGCGGACGAGGCGTGCAATTTCTTCTCGGATGAACAAGCGCCCACGCTGCAGTGGTACTGTTCAGAGGAGTGGAGTTAA 915 0.4754 MKRLGSSDSLGALMTICPPTDEHSPRNNHVYGREFQSMLEGLDDEGCVEEPGHHAEKKRRLSVDQVKALEKNFEVENKLEPDRKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYDSLKLNYDTLQQDNEALLKEIKELKSRLLLQEESNTESDVSVKEEMITLQDSNPLCETAIPGSESKELSYECFNKSDEVLGAFKDGSSDSDSSAILNEENANNNDNSPKNGTISSSGVMQSQSFLSSSSPMNCFQFQKQFPTQYVKMEEHNFLSADEACNFFSDEQAPTLQWYCSEEWS 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03508 304 FunFam Homeobox-leucine zipper protein HAT5 50 114 - -
Vian1g03508 304 SMART HOX_1 55 116 IPR001356 GO:0003677
Vian1g03508 304 Gene3D - 52 119 - -
Vian1g03508 304 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 49 298 IPR045224 GO:0003700
Vian1g03508 304 Pfam Homeodomain 57 110 IPR001356 GO:0003677
Vian1g03508 304 MobiDBLite consensus disorder prediction 211 243 - -
Vian1g03508 304 ProSitePatterns 'Homeobox' domain signature. 87 110 IPR017970 GO:0000981|GO:0006355
Vian1g03508 304 SUPERFAMILY Homeodomain-like 38 114 IPR009057 -
Vian1g03508 304 PRINTS Lambda-repressor HTH signature 83 92 IPR000047 GO:0003677
Vian1g03508 304 PRINTS Lambda-repressor HTH signature 92 108 IPR000047 GO:0003677
Vian1g03508 304 ProSiteProfiles 'Homeobox' domain profile. 52 112 IPR001356 GO:0003677
Vian1g03508 304 Pfam Homeobox associated leucine zipper 112 153 IPR003106 GO:0006355|GO:0043565
Vian1g03508 304 MobiDBLite consensus disorder prediction 209 243 - -
Vian1g03508 304 Coils Coil 125 159 - -
Vian1g03508 304 CDD homeodomain 57 113 IPR001356 GO:0003677
Vian1g03508 304 MobiDBLite consensus disorder prediction 1 28 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03508 Vian-Chr1 57691207 57692583 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03508 1 304 Homeobox Transcription Factor Family AT4G40060 48.137 1.49e-83 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vian1g03508 Homeodomain 3.3e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03508 K09338 - gmx:100796213 496.508
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g03508 1 57691207 57692583 Vian1g03508 1 57691207 57692583 ECH
Vian1g03508 1 57691207 57692583 Vian2g03112 2 51724308 51725791 PCT