Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03506 ATGCCTCCTCCTAAACTCGATGTCGCTGAACATGCTGAGTTAATCAAACATCATAAGCATGTTGTTCAACTAGCGTTGGTTGTGACGACATGCATAGTCGGCGTGTTCATGTTTCTCTTCATCGTCTCCACTCTCATAAGGTACTTTTACTCCAGGAGATATAATCGCACCCCAAATGGAAGAAGAGACACACCCATATTGTTCGATTTGAACGGAGATGCTCCCACTTCGAACAACGATGATGACGTGGCGGACCAAGACGACTTGCCGCCTGTCCACCACGTCTGGTACATCCGCACCGTCGGTCTCCAACAGTCGCTCATAGACTCCATCACCGTCTTCAAATACAGAAAAAATGAAGGAATCATAGACAGCTCCGAATGTTCCGTGTGCCTCGGAGAGTTCCAAGACGACGAAACTCTCAGGTTGTTGCCCAAGTGCAGCCACGCCTTCCACGTGCCTTGCATTGACACCTGGCTCCGGTCCCACAAAAACTGCCCCCTCTGTCGCGCGCCGGTGGTCCGCGATGAAACTGGAGCAGTTGATCAGAATGTTCAGATCGATTCAAGCGTGTCTCTGTCTGATCATCAGAATCAGAATTATGATGTTCGGGTGGAGGATTCTGATGATGGGGCTGGATTAGAAGACGGTGGTGGTTCTGGTGAGTCCTCCGGCGAAAGAGAAACGCAGCCTCTGAGGAGATCGGTTTCGATGGATGTTTCTTCTGCTTCAAATTCAATGGATATAGACACCCCTTATGGGGAAAAAGTGAGTTCCAGTAAGATTCATACGAGTAATATTGTAGAGAAACATGGAAGTGGGAGTTCGAGTTCGAGTTCGAGTTCAAGTTCAACTACCATTAACAAGTTGGCTTCATTTGGACGTGCGTTGCAAAAGGGACCAGTCTCCATGGGAAGATCGTTCTCACATAACAGGAAATTTTTGTTCTCCACACACTATAGGAGTCAGAGTTCTACTCTTCCATTGTAA 990 0.4778 MPPPKLDVAEHAELIKHHKHVVQLALVVTTCIVGVFMFLFIVSTLIRYFYSRRYNRTPNGRRDTPILFDLNGDAPTSNNDDDVADQDDLPPVHHVWYIRTVGLQQSLIDSITVFKYRKNEGIIDSSECSVCLGEFQDDETLRLLPKCSHAFHVPCIDTWLRSHKNCPLCRAPVVRDETGAVDQNVQIDSSVSLSDHQNQNYDVRVEDSDDGAGLEDGGGSGESSGERETQPLRRSVSMDVSSASNSMDIDTPYGEKVSSSKIHTSNIVEKHGSGSSSSSSSSSSTTINKLASFGRALQKGPVSMGRSFSHNRKFLFSTHYRSQSSTLPL 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03506 329 ProSiteProfiles Zinc finger RING-type profile. 128 170 IPR001841 -
Vian1g03506 329 MobiDBLite consensus disorder prediction 206 285 - -
Vian1g03506 329 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 103 178 IPR013083 -
Vian1g03506 329 SMART ring_2 128 169 IPR001841 -
Vian1g03506 329 MobiDBLite consensus disorder prediction 234 285 - -
Vian1g03506 329 Pfam Ring finger domain 127 170 IPR001841 -
Vian1g03506 329 CDD RING-H2_EL5-like 127 170 - -
Vian1g03506 329 SMART FANCL_C_2 124 177 - -
Vian1g03506 329 SUPERFAMILY RING/U-box 112 176 - -
Vian1g03506 329 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 24 178 IPR044675 -
Vian1g03506 329 FunFam RING-H2 finger protein ATL54 103 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03506 Vian-Chr1 57612698 57613687 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03506 93 174 C3H Transcription Factor Family AT5G10380 74.390 2.41e-40 141
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03506 - - gmx:102663026 333.569
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g03506 1 57612698 57613687 Vian2g03116 2 51785265 51786200 PCT