Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03505 ATGAAGCTTTCAGAATTTGTAAAATGTCCAATAAAAGTTCAAAGATGCGCTGGTAGAGTTGTTCAGAAAGAACTTATTGTTCAAGTTGATCATAGGGATGTAGTTCCAGGAGACATTGTAATTTTTGAACCTGGAGACCTCTTTCCTGGAGATATCAGATTGTTATCTTCTAAACAACTTGTTGTAAGTCAGGCCTCACTAACTGGGGAATCTTGGACAACTGACAAAGCTTCTGATATCAGAGAAGACTACAATACTCCTTTATTGGATTTAAAAAACATCTGTTTCATGGGCACAAACGTGGTATCAGGTACTGGAACAGGCCTAGTGGTTTCAACTGGATCCAAGACTTACATGAGCACCATGTTTTCAAAAGTTGGGAAGAAGAAGCCACCAGATGATTTTGAAAAGGGTCTCAGATGGATATTTTACTTGATTATTTCTGTTATGCTAGTAGTTGTTACCATCCTGTTTGTGATGCTTCCCCTCATCATTAACACATGCCTTGCAAAAGGAGCACTTGCTATGGCTAAAGACAGGTGTATAGTAAAGAGTTTAACATCTATACGCGATATGGGATCAATGGATATTCTTTGTATTGACAAGACAGGCTCCCTTACAATGAATCATGCAGTCATGGTTAATCATCTTGATTACAGGGGTTTACCCCAAGAAAACGTTTTACGCTATGCCTTCCTCAACTCTTACTTTAAGACTGATCAGAAGTATCCTCTGGATGATGCTATTCTTGCATTTGTATATTCAAATGGATTCAGGTTTCGGCCATCACTGTGGAGGAAGATAGATGAGATTCCTTTTGACTTCAGAAGAAGAAGAGTATCTGTCATCTTAGAAACAGAAGACAGACACTCAGAATTCTTTGGCAGGTTCATGGTAACAAAAGGAGCACTATTAGAAGTATTAAAAGTTTGTTCTTTCATTGAGAATTTCGAACAAGATGAAGTTTCCCCCTTCTCTTTCGATGATTATCAGCGTATTTTAAATCTTTCAGAAGATATTAGCAATGAAGGGTTAAGGATTCTAGGAGTAGCTATAAGGAAGCTGGAAATGCCGCAAACATGTGAAACAAGTAATGGAAGCAAGAGAGAAGACGAGGATATCGAAAAAGACATGGTGTTCCTTGGCCTCATAACATTTTTCGACCCACCTAAGGACACAGCAAAGCAAGCACTGTGGCGTTTGTGTGAGAAGGGAGTGAAAGCAAAGGTTTTAACTGGTGATTCCCTCTCCCTGACAACAAGGGTATGCAGAGAAGTTGGCATAAGCACCGATCATGTAATAACAGGTCCTGAACTAGAGCTACTTGACCAAGACACGTTCCATGAGACAGTTAAAAGAGCCACAGTACTAGCACGTCTTACTCCAATTCAGAAACTCCATGTGGTGCAATCCTTGCAAACAGTTGGAAACCATGTTGTTGGGTTCTTAGGAGATGGAGTGAATGATTCACTGGCTTTAGATGCTGCGAATGTAAGCATTTCTGTGGATTCAGGAGTAGCCATTGCAAAAGATATGGCAGATATTATCTTACTTGAGAAAGACCTGAACGTGCTTGTTGCGGGAGTGGAGCATGGTAGACTCACTTTTGGCAACACAATGAAGTATGTTAAGATGTCAGTGATTGCTAACTTGGGAAGTGTCATTTCACTCCTCATAGCAACACTGGTATTCAAGTATGAGCCCTTAACTTCTACACAGCTTCTGACACAGAATTTCATCTACAGTGTGGGACAGATTGCCATCGCCTGGGACAAGATGGATGAAGAGTATGTGAAGACACCTCACAAATCCTCAGAAAGAGGCTTGTCCATGTTCATACTGTGGAATGGATCAGTGTGCACTCTGTGTGATGTGGCAACACTCATGCTTCTTTGGTTTTATTACAAGGCTTACACTGATGTGACTCAGAAGTTTTTCCATTCAGCTTGGTTCATTGAAGGTCTTCTCTTGCAGACCCTCATCATCCACTTGATCAGGACTGAAAAAATCCCTTTCATGCAGGAGGTTGCATCTTGGCCTGTGATTTTCTCTACTGTTTTGACTTCTGCAATTGGAATTGCTCTTCCTTTCACACCCATTGGGAAGGATCGTTCACCGAACTGCCGCCGTTCACCGGAGTTGTGTCCGCCATCATTCTGCCCGAAGGTTCCATCATTTCGAAGCACCGTTCAATGCCGAAACCACCATTGA 2211 0.4143 MKLSEFVKCPIKVQRCAGRVVQKELIVQVDHRDVVPGDIVIFEPGDLFPGDIRLLSSKQLVVSQASLTGESWTTDKASDIREDYNTPLLDLKNICFMGTNVVSGTGTGLVVSTGSKTYMSTMFSKVGKKKPPDDFEKGLRWIFYLIISVMLVVVTILFVMLPLIINTCLAKGALAMAKDRCIVKSLTSIRDMGSMDILCIDKTGSLTMNHAVMVNHLDYRGLPQENVLRYAFLNSYFKTDQKYPLDDAILAFVYSNGFRFRPSLWRKIDEIPFDFRRRRVSVILETEDRHSEFFGRFMVTKGALLEVLKVCSFIENFEQDEVSPFSFDDYQRILNLSEDISNEGLRILGVAIRKLEMPQTCETSNGSKREDEDIEKDMVFLGLITFFDPPKDTAKQALWRLCEKGVKAKVLTGDSLSLTTRVCREVGISTDHVITGPELELLDQDTFHETVKRATVLARLTPIQKLHVVQSLQTVGNHVVGFLGDGVNDSLALDAANVSISVDSGVAIAKDMADIILLEKDLNVLVAGVEHGRLTFGNTMKYVKMSVIANLGSVISLLIATLVFKYEPLTSTQLLTQNFIYSVGQIAIAWDKMDEEYVKTPHKSSERGLSMFILWNGSVCTLCDVATLMLLWFYYKAYTDVTQKFFHSAWFIEGLLLQTLIIHLIRTEKIPFMQEVASWPVIFSTVLTSAIGIALPFTPIGKDRSPNCRRSPELCPPSFCPKVPSFRSTVQCRNHH 736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03505 736 Gene3D - 211 387 IPR023299 GO:0000166
Vian1g03505 736 Gene3D - 114 694 - -
Vian1g03505 736 SUPERFAMILY Calcium ATPase, transmembrane domain M 126 699 IPR023298 -
Vian1g03505 736 PRINTS H+-transporting ATPase (proton pump) signature 483 499 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vian1g03505 736 PRINTS H+-transporting ATPase (proton pump) signature 514 539 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vian1g03505 736 PRINTS H+-transporting ATPase (proton pump) signature 333 351 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vian1g03505 736 NCBIfam HAD-IC family P-type ATPase 449 562 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vian1g03505 736 PANTHER CATION TRANSPORTING ATPASE 19 159 - -
Vian1g03505 736 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 194 390 IPR023299 GO:0000166
Vian1g03505 736 SUPERFAMILY Calcium ATPase, transduction domain A 19 124 IPR008250 -
Vian1g03505 736 Pfam haloacid dehalogenase-like hydrolase 335 497 - -
Vian1g03505 736 Pfam E1-E2 ATPase 19 168 - -
Vian1g03505 736 Gene3D - 19 113 - -
Vian1g03505 736 PRINTS P-type cation-transporting ATPase superfamily signature 404 414 - -
Vian1g03505 736 PRINTS P-type cation-transporting ATPase superfamily signature 382 393 - -
Vian1g03505 736 PRINTS P-type cation-transporting ATPase superfamily signature 63 77 - -
Vian1g03505 736 PRINTS P-type cation-transporting ATPase superfamily signature 199 213 - -
Vian1g03505 736 PRINTS P-type cation-transporting ATPase superfamily signature 506 518 - -
Vian1g03505 736 PRINTS P-type cation-transporting ATPase superfamily signature 483 502 - -
Vian1g03505 736 SUPERFAMILY HAD-like 374 531 IPR036412 -
Vian1g03505 736 Gene3D - 196 520 IPR023214 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03505 Vian-Chr1 57595487 57600613 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03505 33 635 Primary Pumps ATPases(2) AT1G10130 26.528 6.29e-57 208
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03505 K01531 - pvu:PHAVU_002G260400g 1290.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g03505 1 57595487 57600613 Vian1g03505 1 57595487 57600613 ECH