Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03493 ATGCTCTGTGCACGGATTTCACTGGAAATAATTTGGACTGTGGTCATCGACTTTGCGAATCTGATAATGCAGACCAAGGTTCATCACATAAATCAAAAACTGGCCTCGTTGTTGGAATTACAGATAGCTACAGACAACTTCAGTGAGAAGAATGTTTTAGGACAGGGAGGCTTTGGAAAGGTCTATAAAGGTGTTCTTGCTGATAACACAAAAGTTGCTGTCAAAAGGTTAACTGATTATGAAAGTCCTGGGGGAGATGCAGCTTTCCAGCGTGAGGTTGAGACGATAAGTGTAGCTGTGCATAGGAACCTGTTACGGTTGATTGGGTTTTGTACTACCCCGACTGAGCGTCTCTTGGTTTATCCCTTTTATGCAGAACTTAAGTTGATGGTTTACCAAGTGAATACTGATGCAGAACTCAAACCTGGTGAACCTGTTCTGGACTGGCCTACTGGAAAACGAGTGGCCCTGGGAACAGCTCGAGCCTTAGAATATCTTCATGAGCATTGCAATCCTAAGATTATTCATCGGGATGTGAAGGCAGCTAATGTATTACTAGATGAAGATTTTGAAGCTGTTGTTGGTGATTTTGGCTTGGCAAAGTTAGTTGATGTTCGGAAAACCAACAATCAGCCGGTCATAGTTGCTCTACCTAAAGAGTATATCATTACCCCTCTTGACATGAGTAATGCTGTAGTGAGCCAAGGAAGTTCGTGTAGCTATAATAGTACATAG 735 0.4245 MLCARISLEIIWTVVIDFANLIMQTKVHHINQKLASLLELQIATDNFSEKNVLGQGGFGKVYKGVLADNTKVAVKRLTDYESPGGDAAFQREVETISVAVHRNLLRLIGFCTTPTERLLVYPFYAELKLMVYQVNTDAELKPGEPVLDWPTGKRVALGTARALEYLHEHCNPKIIHRDVKAANVLLDEDFEAVVGDFGLAKLVDVRKTNNQPVIVALPKEYIITPLDMSNAVVSQGSSCSYNST 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03493 244 FunFam Somatic embryogenesis receptor kinase 1 19 123 - -
Vian1g03493 244 ProSiteProfiles Protein kinase domain profile. 47 244 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g03493 244 SMART serkin_6 47 234 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g03493 244 ProSitePatterns Serine/Threonine protein kinases active-site signature. 174 186 IPR008271 GO:0004672|GO:0006468
Vian1g03493 244 Gene3D Transferase(Phosphotransferase) domain 1 135 242 - -
Vian1g03493 244 Pfam Protein kinase domain 48 224 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g03493 244 SUPERFAMILY Protein kinase-like (PK-like) 28 210 IPR011009 -
Vian1g03493 244 Gene3D Phosphorylase Kinase; domain 1 19 123 - -
Vian1g03493 244 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 34 224 - -
Vian1g03493 244 ProSitePatterns Protein kinases ATP-binding region signature. 53 75 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03493 Vian-Chr1 57488355 57490319 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03493 39 209 Receptor kinase-like Gene Family AT5G10290 83.626 1.10e-96 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Vian1g03493 Pkinase 1.4e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03493 - - gmx:100793416 303.908