Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03486 ATGTTGGGAGAAGAGAGTAGCAACGCCGACACCGGTGTTCACTGGAGAGCACATTCCAGATCAGTTTCTTGGACGGACCAGACTCCGGTGGTCCGGAAACCGCCGCGATCCCTTCAGCCTCTTTGCATCAGGAAAGACACGGTGAAGGAGTGGCCCAGCGCCGGCGGCGACGATCTCGAGGTTTGGCTTCCGCCACCGACCCCAAGAGGGTCCACCAAAGGATCATCAAATTTGGGTTCGGGTTCGGGTCAAGTTTTTCAGCTTAGGAGAGACAAGTTGGCTTTCTACGACAAGGAATGTTCGAAAATCGCGGAGCACGTGTACTTGGGAAGTGACACGGTGGCAAAGAACGAGGAGGTTTTGCGGCGACACGGGATAACGCACGTGCTGAATTGCGTGGGGTTCGTTTGCCCCGAGTATTTCAAAAGCGACTTCGTCTACAAAACGCTATGGCTGAGGGACAGTCCCTCGGAGGACATCACAAGCATTCTCTACGACGTTTTCGATTACTTCGAGGATGTCCGACAACAGGGTGGGCGCGTGCTCGTACACTGCTGCCAGGGCGTGTCACGCTCCACCTCGTTGGTCATCGCGTATCTCATGTGGAGGGAGAACCAGAGCTTCGAGGACGCGTTTCACATCGTCAAGAACGCGCGTGGCATCATCAATCCGAACATGGGTTTCGCTTGTCAGCTATTGCAGTGTCAGAAGCGCGTGCACGCTACGCCCCCGAGTCCTAGTTCTGTGCTCAGAATGTATAGGATGGCTCCTCACTCTCCCTACGACCCTCTTCACCTTGTTCCTAAGATGGTCAACAACCCATGCGCCCACGCGCTTGATTCGCGTGGGGCGTTTATTGTGCATGTTTCTTGTACTTTATATGTGTGGGTTGGGAAGGAGTGTGGCACGGTGATGTGTTGCAAGGCGCGTCATGCAGCTGCTCAGGTTGTTCGATATGAGAGGGCGACTGGGGAGATAGTTACCGTGGTTGAGGATGAAGAGCCTGAGGAGTTTTGGGTTGCTCTTTCTCACAGGCATGAAGAGATGAAGAACGTTGAAACAATGGAGGTTGATGTAGGGATTCATCCCCGGAGAGTTGAGGAGTATGATTTGGACTTTGGAATTTTTCACAAGGCACTTTCTGGTGGGGTTGTTCCACCCTTTTCATTGTCCAAGGCTGGATCAGAAAATTGCCTCCCTTCTAAGGAAAATGGGTGGGGGAGATTAACTTGGAAGCTTACTGGAAGTACCATGAAAGGGTTCACATCCTCCAATATGAACATTGTAGAGGAAAATCACCACATGAATGTTGATCCTTTGCCTTCATCTTCTAAACCCTTTTACGATGAAGATGCGTCTGACTCAAAGATTTGGCCTTTACTTCAAAAAGAAGGTGTATCTTCATCTCCAGAGGCATTTTTGGCTAATCAGACCTCGGTAAGGGAAGAGTCTAGTTTAGCGTTCAAAGGGTCTAAACCCTCCATTGCGGAGCGCAGAGGGACTAACCTGCCACCTCGTACGGTGCTACTCTCGACCGGCAACAGTAAGGTCCGAGTAAGATCTAAGTCAATCTCATTACCTGCCTTGGATGATACTTTGTTGAGTGATGTTAGTTGCGAGCAATTCGACCATGAAAACAGTGCAAAATAG 1650 0.5073 MLGEESSNADTGVHWRAHSRSVSWTDQTPVVRKPPRSLQPLCIRKDTVKEWPSAGGDDLEVWLPPPTPRGSTKGSSNLGSGSGQVFQLRRDKLAFYDKECSKIAEHVYLGSDTVAKNEEVLRRHGITHVLNCVGFVCPEYFKSDFVYKTLWLRDSPSEDITSILYDVFDYFEDVRQQGGRVLVHCCQGVSRSTSLVIAYLMWRENQSFEDAFHIVKNARGIINPNMGFACQLLQCQKRVHATPPSPSSVLRMYRMAPHSPYDPLHLVPKMVNNPCAHALDSRGAFIVHVSCTLYVWVGKECGTVMCCKARHAAAQVVRYERATGEIVTVVEDEEPEEFWVALSHRHEEMKNVETMEVDVGIHPRRVEEYDLDFGIFHKALSGGVVPPFSLSKAGSENCLPSKENGWGRLTWKLTGSTMKGFTSSNMNIVEENHHMNVDPLPSSSKPFYDEDASDSKIWPLLQKEGVSSSPEAFLANQTSVREESSLAFKGSKPSIAERRGTNLPPRTVLLSTGNSKVRVRSKSISLPALDDTLLSDVSCEQFDHENSAK 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03486 549 Gene3D Protein tyrosine phosphatase superfamily 83 241 IPR029021 -
Vian1g03486 549 Gene3D Severin 251 350 IPR029006 -
Vian1g03486 549 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 158 219 IPR000387 GO:0016311|GO:0016791
Vian1g03486 549 MobiDBLite consensus disorder prediction 69 83 - -
Vian1g03486 549 MobiDBLite consensus disorder prediction 485 509 - -
Vian1g03486 549 SUPERFAMILY Actin depolymerizing proteins 245 347 - -
Vian1g03486 549 CDD DSP 100 234 - -
Vian1g03486 549 ProSitePatterns Tyrosine specific protein phosphatases active site. 183 193 IPR016130 GO:0016311|GO:0016791
Vian1g03486 549 ProSiteProfiles Dual specificity protein phosphatase domain profile. 99 241 IPR020422 GO:0006470|GO:0008138
Vian1g03486 549 SMART VILL_6 254 345 IPR007122 GO:0051015
Vian1g03486 549 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 89 241 IPR029021 -
Vian1g03486 549 SMART dsp_5 99 238 IPR020422 GO:0006470|GO:0008138
Vian1g03486 549 PANTHER MKPA PROTEIN 23 517 - -
Vian1g03486 549 MobiDBLite consensus disorder prediction 55 83 - -
Vian1g03486 549 Pfam Dual specificity phosphatase, catalytic domain 107 237 IPR000340 GO:0008138|GO:0016311
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03486 Vian-Chr1 57406121 57407770 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03486 98 241 Protein tyrosine phosphatase (PTP) family AT3G06110 36.111 3.27e-25 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03486 - - vra:106766435 1096.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g03486 1 57406121 57407770 Vian1g03486 1 57406121 57407770 ECH