Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03455 ATGGAAAAGGAGAGGCTTGGCTGTCTTCCCACTCATTTAAAGAAGCTTAGGATGAACAGTGAGTTTGATTTGTTTGAGGAAAGAGAATGCTTCTCTTGCTTCTATGACTTGCACCTATCCGCCGTAGGTTGCAAGTGCTCCCCCGATACTTATTCATGTCTAAAGCACTCACACTTGTTTTGCTCATGTGAAGTGGACAAAAGCTTTATTCTGTCTCGTTATACCATGAATGAACTAAGTACATTGGTTGAGGCATTAGAAGGAGAAACACATGCTATTCTAGTGTGGGCAAATAGAAACACTGGACTGGTATCTGCTAATCCTGAGGATGCTTGCATTTATAAACAAGATGCGGAGAGTTACAAAGGATGGAAAAGCTTAACACATTGTGCAGGAACTAATAATAAGTCAAATTCAAATATACCTAGCAGTTCTCATAGCCACATTTCTGCGGAGTTAGAGCACTCAGAGTTTCACCGTGAAATTTATAGTGCACAATATGGCACTAAAGATTGTCAAAAAGATATTGAGAATGAAGAAAAATTGGTCATGTACAATGAAGATAAGATGAAGGAAGGTTCTCTGGATTTAAATATTGACGTTATGTTTGTTGAACGTGAAAATCGTTTTCTGCATGCTGCTGAATACCATCATAATAAGAGTGTTCCATATGTTGGAAAAGTATGCTATTCAGAGGTCAGAAAGAAACAAGACAACATGGAACCTGGGGCTGGATATATAGCTTCCTTGGAGAAAGAATTTTCATCATGTTCAAGGAACGTTCAAAATTCTTCTACACTAGATGGTTATAAATTGTTTGGGGTGGACCTACAGTTGCGTTCTGATTCGAGAGAACAACTCAACGGTGTATTTAAAATAGGTGATGTTGAAACTTCCAATGCAAGTGTATCTTTGACAAACCAAAACTTCTTAATGCAGAAGATTAGTGTTTCTGTTGAGCCTGTGAATTTGGGCATTGTTATGTGTGGTAAGTTGTGGTGCAGTAGGCATGCAATATATCCAAAAGGATTCAAGAGTCGTGTTAAGTTCTTAAGCATTCTTGATCCACCAAGAATCTGTAACTATGTTTCTGAAGTCTATGATGCTGGATTTCTTGGGCCTCTTTTCAAGGTTACCATTGAAGAACATCCAAGTGAGATCTTCACAAACACCTCGGCAGATAAGTGCTGGGAGTCAGTTCTTTTGAGACTAAATCATGAAACCGAGAAGCTAAGGAATCAAGGTCAAAGAGAACTTCCTCCCTTGGAGCTTCTGAAAAGCATTAATGGTCATAAAATGTTTGGATTCCTTTCACCTTCCATTATTCAGGCTATTGAAGCTCTGGACCCCAATCATCAATGCATCGAGTACTGGAATCACAAAGAAGTTGTCTCTGAATCTTCAGAAAGTGGCATTGATGACTGTAAGCTCAGTCACGGTTCAAGTAACTCTCTAAGTGATGTCAAAACCAGACTTCTTGGTCCTGGTTTGAGAAAGCTGGAACAAGATAGCAGCAGAAGACATTGTGATTCATTTGAAGAGATGAAATTGGTGGTAGAAGGGTTATTGAAAAAGGCGAATGCTGAAGAATTAAGTGCCATGCACAAGTTATTCAGCTCTGATGCACAGTTCAACAATTGGAGAGTGGCATTTGTAACGCTGATTGAGGAAATCCAGAAAGCTTGTGCATAA 1692 0.3918 MEKERLGCLPTHLKKLRMNSEFDLFEERECFSCFYDLHLSAVGCKCSPDTYSCLKHSHLFCSCEVDKSFILSRYTMNELSTLVEALEGETHAILVWANRNTGLVSANPEDACIYKQDAESYKGWKSLTHCAGTNNKSNSNIPSSSHSHISAELEHSEFHREIYSAQYGTKDCQKDIENEEKLVMYNEDKMKEGSLDLNIDVMFVERENRFLHAAEYHHNKSVPYVGKVCYSEVRKKQDNMEPGAGYIASLEKEFSSCSRNVQNSSTLDGYKLFGVDLQLRSDSREQLNGVFKIGDVETSNASVSLTNQNFLMQKISVSVEPVNLGIVMCGKLWCSRHAIYPKGFKSRVKFLSILDPPRICNYVSEVYDAGFLGPLFKVTIEEHPSEIFTNTSADKCWESVLLRLNHETEKLRNQGQRELPPLELLKSINGHKMFGFLSPSIIQAIEALDPNHQCIEYWNHKEVVSESSESGIDDCKLSHGSSNSLSDVKTRLLGPGLRKLEQDSSRRHCDSFEEMKLVVEGLLKKANAEELSAMHKLFSSDAQFNNWRVAFVTLIEEIQKACA 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03455 563 SMART fyrn_3 325 369 IPR003888 GO:0005634
Vian1g03455 563 Gene3D - 317 455 - -
Vian1g03455 563 Pfam C5HC2 zinc finger 30 82 IPR004198 -
Vian1g03455 563 Pfam F/Y-rich N-terminus 322 366 IPR003888 GO:0005634
Vian1g03455 563 ProSiteProfiles FYR domain FYRC motif profile. 371 461 IPR003889 GO:0005634
Vian1g03455 563 SMART fyrc_3 375 470 IPR003889 GO:0005634
Vian1g03455 563 FunFam Putative lysine-specific demethylase JMJ16 317 455 - -
Vian1g03455 563 Pfam F/Y rich C-terminus 373 460 IPR003889 GO:0005634
Vian1g03455 563 ProSiteProfiles FYR domain FYRN motif profile. 311 369 IPR003888 GO:0005634
Vian1g03455 563 PANTHER TRANSFORMING GROWTH FACTOR BETA REGULATED GENE 1 145 470 IPR040092 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03455 Vian-Chr1 57058782 57061307 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03455 313 497 JUMONJI Transcription Factor Family AT1G30810 53.514 1.01e-55 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03455 K11446 - gmx:100784581 850.892