Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03445 ATGGCCGGAACTTCGTCTTCTGAAATTCACATCGCTGAATTTCCACCAAATCTCAATGTCCTTGTCATTGATACTGACCCCGGAGCTCTTGAAGTCATCGAGAAATCATGCAAAGAGAATTCTCATCAAGTGGTAATATGCTCTGAATCTTCAAGGGCTGTGGATGTTTTGCTGAAAAAAGAAATAGACATTCGTTTGATCATCATGGAGCTTCATATGCCAATGATGGATGGCTATGAATTCCTGCAATTTCTCAATAAAGAAGAAATTGATATTCCTTTTGTCATGATGTCTGAGGATAGTACTTGGTTTTCCATGACAAAGGCTTTCCATCTTGGAGCTATCTATTATTTCTTGAAACCCTTCAATAATGACAAACGGTTAGATTTGTGGGCACCTTTGTTAAGGCATTATTACGACAGGCTGAACAAAAAAGATGATGAGACAAGTGATGGTTCTGAATTTGCTTCTGATGGAGAATCTGATGGAGAAGCCGAAGCCGATGATACCCTCCACAAGAAAGACGATACCCTCATCAAGAAAGAATAG 549 0.3953 MAGTSSSEIHIAEFPPNLNVLVIDTDPGALEVIEKSCKENSHQVVICSESSRAVDVLLKKEIDIRLIIMELHMPMMDGYEFLQFLNKEEIDIPFVMMSEDSTWFSMTKAFHLGAIYYFLKPFNNDKRLDLWAPLLRHYYDRLNKKDDETSDGSEFASDGESDGEAEADDTLHKKDDTLIKKE 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03445 182 SMART REC_2 18 128 IPR001789 GO:0000160
Vian1g03445 182 SUPERFAMILY CheY-like 16 137 IPR011006 -
Vian1g03445 182 MobiDBLite consensus disorder prediction 166 182 - -
Vian1g03445 182 Pfam Response regulator receiver domain 20 126 IPR001789 GO:0000160
Vian1g03445 182 MobiDBLite consensus disorder prediction 144 182 - -
Vian1g03445 182 PANTHER TWO-COMPONENT RESPONSE REGULATOR 19 150 IPR045279 GO:0009736
Vian1g03445 182 Gene3D - 6 152 - -
Vian1g03445 182 ProSiteProfiles Response regulatory domain profile. 19 135 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03445 Vian-Chr1 56919351 56920154 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03445 2 175 Response Regulator Gene Family AT4G16110 29.310 1.76e-20 86.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vian1g03445 Response_reg 1.6e-16 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03445 - K14491 vra:106769483 212.231