Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03428 ATGTTGGACGCCATGGATGAACGTCTAACAAAAAAGTATGCATTCCATGATCCCAACTATATTGTTAGGGACAAAGTATACAACTTTATCAAACTCATCAATACGGGGTCCATTTTTGTTCTTCTGATCTTTTCGGTAGCATCAAATCCAAGCTCAGCAACGCCCTCTCCCTCTCCTTCTCCTACCATTTCCCCCACCAACAATTCTACATGCCCAGTGCCCATGAATTATGTTCAAACAGTCCCTTGGAACATCTCTTCCTGCCAAAACTTCCAACCCTTGTCAACCCAATACCAAACAAGCACAAGTTCTTGTTGCCAAACACTCCTATCTCTCTTTGGGGTAGCACTTGCACAAAACCTCAAGGAAAACTCCCTTTTTCAACTACCCAACCTCCCTACATCTATCTCTTGCCTCCAAGACTTCCAATCCAATCTCACATCCCTCTCACTTCCCAACAACCTTGTCTCCTCCTGCTTTGATCCACAACAATTTGTCATCACTCCCAACATCTGTGCTCGGATTCAAAACATGGAAGATTGGCTCACCAGGCTTGGATCTACGCCACAGCTCGACACTGCGTGTAAACCCGACCTTAGTGATAGAAACCAATGCAGAAAGTGCGTGGCTGAGGGGGACAAGGTTCAGCAGAAGCTTAGTGCCATTGATGGTAATGAATCACATTCCCAAGATTGCTTTTACTTCACAGCACTTTACATGGCTGGAGTGGCCAATCAGTATGGCCCTGAGAGCAGAGGTGCTTTGTCTTGCATTTTGACTTTGTTGCTTAATTCACAAGTTGATTCAAGGGATGGCCATCGTGCTCTTAGGCTTGGTTTGTTTGTAGCTTCACTTGCAGTCCTGGTAATCCTGTTGTTAGGATCAGGGTTGTATTTTTGGTATACCAAGAGAAGAAGTGTTGAAAATTTGCTTGCCTATGCTGATCTACAGGACGAAAGGTTCAGGCAAAGGCTGAGACCAAATACAGCGTTAACTTGGTTTGAAATTGAGAGTCTCGTGAAGGCCACCAATAATTTTTCACCTCAGAATTTCATTGGTAGAGGTGGGTTTGGGATGGTTTACAAGGGCCTTCTACCTGATGGCACAATGGTTGCGGTGAAAAGGCTTGAAGAATTCGATTCTCAAGGAGATACTCTGTTCTACAGTGAGGTTGAGATTGTTAGCAACTTGAAGCACCGTAATCTAGTGCCACTAAGAGGGTGTTGTTTGGTTGATGGGAGTCACAATCTTGAGTACAGAGGAAGGTATCTAGTTCATGAATATATGCCAAATGGAAGTCTTCAAGACCATCTTTTTCCAACCAAATTAGAGAATCAATATGCAAAGAAATCCCTGACTTGGACTCAAAGAAAAAGCATAATCTTGGATGTGGCAAATGCATTGGTTTATTTACACTTTGGAGTTAAACCTGCAGTGTATCACAGAGATATTAAAGCCACCAATATACTACTTGATGCAGATATGAGGGCGAGGGTTGGAGATTTTGGGCTAGTCAAACGGAGTAGTGAAAGTACGTCTCATCTAAATACAATAGTTGCTGGAACTCGTGGATATGTAGCACCTGAATATGCACTCTATGGTCAACTAACTGAGAAGAGTGACGTCTACAGCTTTGGTGTGGTTGTTCTTGAGATAATGTGTGGAAGAAAAGCCCTTGAGGTGTCCTCATCAGGGACACCGGTTTTCCTGATCACAGATTGGGTTTGGTCATTAATGAAATCTGGAAACATAGGAGAGGCTTTGGATGCTTCTATGTTTGGAGACGGAAATCATGCTACAAACATAATGGAGAGGTTTTTACTGGTTGGAATTCTTTCTTCTCATGTAGTTGTTGCTTCAAGGCCAACAATTTTGAATGTCTTGAAGATGTTAGAAGGGGATATTGAAATCCCACCAATTCCAGATAGGCCACTGATGCACGGGCACTATGTCATGTACGATCGTGATTGCTCTGGGATGAGCTCTGGATGTGGGTTTGTGAGCTCATGA 2010 0.4328 MLDAMDERLTKKYAFHDPNYIVRDKVYNFIKLINTGSIFVLLIFSVASNPSSATPSPSPSPTISPTNNSTCPVPMNYVQTVPWNISSCQNFQPLSTQYQTSTSSCCQTLLSLFGVALAQNLKENSLFQLPNLPTSISCLQDFQSNLTSLSLPNNLVSSCFDPQQFVITPNICARIQNMEDWLTRLGSTPQLDTACKPDLSDRNQCRKCVAEGDKVQQKLSAIDGNESHSQDCFYFTALYMAGVANQYGPESRGALSCILTLLLNSQVDSRDGHRALRLGLFVASLAVLVILLLGSGLYFWYTKRRSVENLLAYADLQDERFRQRLRPNTALTWFEIESLVKATNNFSPQNFIGRGGFGMVYKGLLPDGTMVAVKRLEEFDSQGDTLFYSEVEIVSNLKHRNLVPLRGCCLVDGSHNLEYRGRYLVHEYMPNGSLQDHLFPTKLENQYAKKSLTWTQRKSIILDVANALVYLHFGVKPAVYHRDIKATNILLDADMRARVGDFGLVKRSSESTSHLNTIVAGTRGYVAPEYALYGQLTEKSDVYSFGVVVLEIMCGRKALEVSSSGTPVFLITDWVWSLMKSGNIGEALDASMFGDGNHATNIMERFLLVGILSSHVVVASRPTILNVLKMLEGDIEIPPIPDRPLMHGHYVMYDRDCSGMSSGCGFVSS 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03428 669 FunFam Receptor-like serine/threonine-protein kinase At4g25390 311 428 - -
Vian1g03428 669 Pfam SPARK 67 233 IPR043891 -
Vian1g03428 669 ProSitePatterns Serine/Threonine protein kinases active-site signature. 479 491 IPR008271 GO:0004672|GO:0006468
Vian1g03428 669 SUPERFAMILY Protein kinase-like (PK-like) 327 632 IPR011009 -
Vian1g03428 669 Gene3D Phosphorylase Kinase; domain 1 310 428 - -
Vian1g03428 669 Pfam Protein kinase domain 349 561 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g03428 669 ProSitePatterns Protein kinases ATP-binding region signature. 352 374 IPR017441 GO:0005524
Vian1g03428 669 SMART serkin_6 346 631 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g03428 669 Gene3D Transferase(Phosphotransferase) domain 1 429 637 - -
Vian1g03428 669 ProSiteProfiles Protein kinase domain profile. 346 646 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g03428 669 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 429 639 - -
Vian1g03428 669 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 81 651 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03428 Vian-Chr1 56756256 56758265 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03428 63 652 Receptor kinase-like Gene Family AT1G11050 56.594 0.0 641
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Vian1g03428 Pkinase 3.8e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03428 - - vra:106765729 1205.66