Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03421 ATGGATTCTCATGGCACTTCCCAAGGCTGTCCACAGAGGGAGCATGAAGGCCATCGTGAGGCGGTTTTCTTACATGGTGACTTGGATCTGTTGATAATTGAAGCCAAGTCTCTTCCAAATTTAGATTTATCGTCTGAAGCAGTTAGAAAATGTGTGACTTTGGGCAACGTGTGCCATCCTCCATTTATGAAAGGACTAAAGTCACACGGTGGAAAAGATAAGATGATAACAAGTGACCCTTATGTTTCAGTATGCATAGCTGGGGCAACCGTTGCTCGAACTAGAGTGATTCCTAACTGTGAGAACCCTTGCTGGGATGAGCAATTTATTGTGCCTGTTGCTCACCCTGCTCATAAAGTGGAGTTTCTTGTGAAGGATAATGATATTCTGGGGGCTGAACTCATTGGAGTGGTGGAGATACCAGTTTACAAGATAATTTCTGGTAATGCTATCAATGATTGGTTTCCCATCATTGGTCAGTATGGAAGCTGCTTAAAACCTTATCCTGAACTGCATCTTTCTGTTCAATATAAGCCAATTGCAGTGAACCCTACACAAAAAGTAATGAATGAGGATGGGACAGCATATTTAGGAGTTTCTAAAACCTATTTCCCTCTCAGGAAAGGAGGGAGTGTGACTCTGTATCAAGATGCACATATGCCAGATGGTATGATACCTGAAATCCCACTTGAGGGTGGAAAAGTGTTTCAGCAAAATAAATGTTGGGAAGACATATGTCATGCAATTTTGGAAGCTCATCACATGATATACATTATAGGATGGTCAGTTTACCACCCAGTTAGGCTTATCAGAGAGGCAACAAAGCCAGTACCTTCAGGGGGAGAGCTTTCACTTGGAGAGCTATTGAAATACAAGTCACAAGAAGGACTCCGAGTGGTTGTGCTGATTTGGGACGACAGAACTTCACATGACAAGTTTCTTCTGAAAACAGATGGTGTCATGCAGACTCATGATGAGGAAACTAAGAAGTTTTTCAAACATTCCACTGTTCATTGTGTGCTATCTCCACGTTATGCAAGCAATAAGCTCAGTATTTTCAAGCAACAGGCATGGAGTTGTCACATTGAATCTAGTAGTGTTGTGGGAACCCTCTTCACACATCACCAGAAATGTGTGCTTGTAGACAGCCTTGGTTCTGGGAATAATCGGAAAATAACTGCTTTTATTGGTGGTTTGGATCTATGTGATGGTAGATATGATACCCCTGAGCATCGGCTTTTTCGTGATATGGATTCGGTTTTTCATAATGATTTTCACAACCCTTCTTTTCAACAACTAAGTTCGAATTCGTGTGCTCCAAGGCAACCATGGCATGACTTACATTGTAAAATTGAAGGTCCAGCAGCATATGATATATTAACCAATTTTGAACAAAGATGGAGGAAGGCCAAAAAATGGCGTGACTTCAGACTCAAAAAGGTGACAAACTGGCATGATGATGCTTTGCTTCGGCTGGATCGAATTTCATGGATTGTCAAACCTGCTCCTTGCCCCAATGGTGAAAAGGCTGTTTATGTAACCGATGAAAATGATCCTGAAAGTTGGAATGTGCAGGTGTTTAGGTCCATAGATTCTGGATCTGTAAAGGGATTTCCGAAGGATGTTTTCAAAGCTAAGGCTCAGAATCTTTTGTGTGGAAAAAATTTGAAAGTTGATCAAAGCATCCATACTGCTTATGTAAGAGCAATAAGATCTGCCGAGCACTTTATATATATTGAGAATCAGTATTTTCTGGGCTCCTCCTATCACTGGCCTTCATATAAAAATAAAGCTGGTGCAAACCACTTGGTTCCCATGGAGTTGGCTTTGAAAATTGCTGGTAAGATCAGTGTAAATGAACGTTTTTCTGTATATATAGTTATACCAATGTGGCCAGAGGGTGTTCCAACAAGTGCTGCTGTTCAAGAAATCTTGTTCTGGCAGGGACAGACAATGTCTATGATGTACAAGATTATTGCTGATGCCCTTGCAAAAGCAGGTCTCTCTGATATGTATCATCCACAAGATTATCTCAATTTTTACTGCCTTGGAAAGAGAGAACCCCCAAGCTCAAATGTTTCTTCAACGACAAGTCCATCTGAAAACCGCGCTTTGGTAGCAGTAAAAAAATTCAGACGTTTTATGATCTATGTCCATGCCAAAGGAATGATAGTTGATGACGATTACGTGATTATTGGATCAGCAAATATTAACCAGAGATCATTAGATGGTTCCAGGGACACAGAAATAGCTATGGGAGCTTATCAACCAAAATATACATGGACAGAAAGTAGACCCCATCCACGTGGCCAGGTGTATGGATACAGAATGTCACTGTGGGCTGAGCACCTTGGTAGCCTTGACCATGTTTTTGGTGAACCTCAGACCCTGGAATGTGTTAGACAAGTGAACAAAATTGCAAAACAAAACTGGGGCATATATGTGTCCGAAGAAGGGAAATACATGAGGGGACATTTGATGCAGTATCCCGTTAAGATCAGCAGGGAAGGAAAAGTGAGTGCATTAGATGATTATGAGTCTTTTCCTGATGTTGGTGGCAAAGTTCTTGGATCACCAAACTCACTTCCGGATCAACTAACCACCTGA 2607 0.4139 MDSHGTSQGCPQREHEGHREAVFLHGDLDLLIIEAKSLPNLDLSSEAVRKCVTLGNVCHPPFMKGLKSHGGKDKMITSDPYVSVCIAGATVARTRVIPNCENPCWDEQFIVPVAHPAHKVEFLVKDNDILGAELIGVVEIPVYKIISGNAINDWFPIIGQYGSCLKPYPELHLSVQYKPIAVNPTQKVMNEDGTAYLGVSKTYFPLRKGGSVTLYQDAHMPDGMIPEIPLEGGKVFQQNKCWEDICHAILEAHHMIYIIGWSVYHPVRLIREATKPVPSGGELSLGELLKYKSQEGLRVVVLIWDDRTSHDKFLLKTDGVMQTHDEETKKFFKHSTVHCVLSPRYASNKLSIFKQQAWSCHIESSSVVGTLFTHHQKCVLVDSLGSGNNRKITAFIGGLDLCDGRYDTPEHRLFRDMDSVFHNDFHNPSFQQLSSNSCAPRQPWHDLHCKIEGPAAYDILTNFEQRWRKAKKWRDFRLKKVTNWHDDALLRLDRISWIVKPAPCPNGEKAVYVTDENDPESWNVQVFRSIDSGSVKGFPKDVFKAKAQNLLCGKNLKVDQSIHTAYVRAIRSAEHFIYIENQYFLGSSYHWPSYKNKAGANHLVPMELALKIAGKISVNERFSVYIVIPMWPEGVPTSAAVQEILFWQGQTMSMMYKIIADALAKAGLSDMYHPQDYLNFYCLGKREPPSSNVSSTTSPSENRALVAVKKFRRFMIYVHAKGMIVDDDYVIIGSANINQRSLDGSRDTEIAMGAYQPKYTWTESRPHPRGQVYGYRMSLWAEHLGSLDHVFGEPQTLECVRQVNKIAKQNWGIYVSEEGKYMRGHLMQYPVKISREGKVSALDDYESFPDVGGKVLGSPNSLPDQLTT 868
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03421 868 Pfam C2 domain 26 157 IPR000008 -
Vian1g03421 868 PANTHER PHOSPHOLIPASE D 19 857 IPR015679 -
Vian1g03421 868 Gene3D Endonuclease Chain A 232 489 - -
Vian1g03421 868 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 370 405 IPR001736 GO:0003824
Vian1g03421 868 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 714 741 IPR001736 GO:0003824
Vian1g03421 868 FunFam Phospholipase D delta 232 488 - -
Vian1g03421 868 SMART pld_4 370 405 IPR001736 GO:0003824
Vian1g03421 868 SMART pld_4 714 741 IPR001736 GO:0003824
Vian1g03421 868 SUPERFAMILY Phospholipase D/nuclease 560 785 - -
Vian1g03421 868 Pfam Phospholipase D C terminal 788 858 IPR024632 -
Vian1g03421 868 PIRSF PLD_plant 13 868 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Vian1g03421 868 ProSiteProfiles C2 domain profile. 7 155 IPR000008 -
Vian1g03421 868 CDD C2_plant_PLD 21 177 - -
Vian1g03421 868 Gene3D C2 domain 22 178 IPR035892 -
Vian1g03421 868 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 24 179 IPR035892 -
Vian1g03421 868 SMART C2_3c 27 154 IPR000008 -
Vian1g03421 868 Gene3D Endonuclease Chain A 531 769 - -
Vian1g03421 868 SUPERFAMILY Phospholipase D/nuclease 202 475 - -
Vian1g03421 868 Pfam Phospholipase D Active site motif 715 741 IPR001736 GO:0003824
Vian1g03421 868 Pfam Phospholipase D Active site motif 371 405 IPR001736 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03421 Vian-Chr1 56678238 56686900 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03421 16 867 Phospholipase D Gene Family (Wang group) AT2G42010 52.673 0.0 909
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03421 K01115 - gmx:100810824 1573.53