Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03420 ATGGGTAAGTCCTCTTTCTCCTTCCGCCGCTCCGTCTCTCGCCGCCGCACCAAGAAGACTACAGCGCCACCCCCTCGCCGGTCCCCGCCACAGCCTCCCTACGCCGCTGGGATCACCGCTTCGCCGGATGGAGCCGCAAACAACGGCCTCGTCGCAGGTGCAGGTGCCGGCGCGATGACCAAGGTGAAGAAGAAGACCGGCAGCGCTCGGCTCTGGATGAGGTTCGACCGGTCCGGCCGGTCCGAGCTCGTGGAGTGGGAGAAGAACGCCATCATCCACCATGCCGCGATTCCCGCTCGAGACCTGAGAATCCTTGGCCCCGTCTTCTCCCACTCCTCGAACATCCTCGCTAGAGAGAAAGCAATGGTTGTTAATTTGGAGTTTATAAAGGCTATAGTGACTGCTGAAGAAGTGCTACTGCTTGATCCTCTTCGGCAGGAGGTTCTTCCCTTTGTTGAGCAACTCAGGCAGCAGCTTCCGGGCAAGTCTCAACCGAAACTTCTCGGCGCCGTGGAGGATCAGGAAGGTGAATTGCTGGGTTCAAATGGAAGACAATGGTTGCCTATGCCGGAGACGGTTGAAGGTTTGCAGGCTGAACTTCCGTTTGAGTTTCAAGTTCTGGAGATTGCTTTGGAGGCTGTATGTACTTATCTGGACTCCAGTGTAGCAGACCTTGAGAGAGGTGCTTACCCTGTGTTAGACGAATTGGCTAGGAATGTTAGTACCAAAAATCTTGAACATGTGAGGAGTTTGAAGAGTAATCTCACGCGGTTGCTGGCACGAGTGCAGAAGGTACGGGATGAAATTGAACATTTGTTAGATGACAACGAAGATATGGCACAACTATATTTGACAAGGAAGTGGCTGCTGAATCAACAAATTGAGGAGGCTCAATTGGGTGCCACAACCTCAAATAACCTTCCTAATTCCGCCCGTTCTGTTCGACGCCTTGGTTCTACCAGAAGTGAAAGTCTTGCAACCAGCCATTATGGGGAAGATAATGATGTGGAGGACCTGGAGATGTTGCTTGATGCATATTTCATGCAGTTAGATGGAACTCGTAACAAGATATTATCTGTTAGGGAGTATATTGACGACACGGAAGACTATGTCAACATCCAACTCGATAACCATCGAAATGAACTTATTCAGCTGCAGTTGACATTGACTATTGCATCATTTGCTATTGCTATTGATACTTTGGTTGCGGGTACATTTGGTATGAACATTCCTTGTAAATTGTATAATATAGATGGAATATTTTGGCCCTTTGTTTGGATCTCGTCTGCAGCTTGTGTACTCCTTTTCTTGCTTATTTTAGCATATGCAAGATGGAAAAAGTTGTTGGGATCATAA 1356 0.4889 MGKSSFSFRRSVSRRRTKKTTAPPPRRSPPQPPYAAGITASPDGAANNGLVAGAGAGAMTKVKKKTGSARLWMRFDRSGRSELVEWEKNAIIHHAAIPARDLRILGPVFSHSSNILAREKAMVVNLEFIKAIVTAEEVLLLDPLRQEVLPFVEQLRQQLPGKSQPKLLGAVEDQEGELLGSNGRQWLPMPETVEGLQAELPFEFQVLEIALEAVCTYLDSSVADLERGAYPVLDELARNVSTKNLEHVRSLKSNLTRLLARVQKVRDEIEHLLDDNEDMAQLYLTRKWLLNQQIEEAQLGATTSNNLPNSARSVRRLGSTRSESLATSHYGEDNDVEDLEMLLDAYFMQLDGTRNKILSVREYIDDTEDYVNIQLDNHRNELIQLQLTLTIASFAIAIDTLVAGTFGMNIPCKLYNIDGIFWPFVWISSAACVLLFLLILAYARWKKLLGS 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03420 451 CDD Mrs2_Mfm1p-like 72 448 IPR039204 -
Vian1g03420 451 FunFam Magnesium transporter MRS2-1 60 143 - -
Vian1g03420 451 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 387 439 IPR045863 -
Vian1g03420 451 Pfam CorA-like Mg2+ transporter protein 331 444 IPR002523 GO:0016020|GO:0030001|GO:0046873|GO:0055085
Vian1g03420 451 Gene3D Magnesium transport protein CorA, transmembrane region 145 382 - -
Vian1g03420 451 Coils Coil 248 282 - -
Vian1g03420 451 Gene3D - 58 143 - -
Vian1g03420 451 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 35 449 IPR039204 -
Vian1g03420 451 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03420 Vian-Chr1 56669879 56672600 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03420 1 451 MRS2 Gene Family AT3G58970 64.758 0.0 549
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03420 K16075 - gmx:100812561 749.969
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g03420 1 56669879 56672600 Vian2g03144 2 51972545 51974352 PCT