Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03417 ATGGAGATTCACTACAGTAGCAGCTACTTCGAAAGACGTCCCATTCTCAAGTCCAAGGCTCCCGCAGTTAAATGGGTTAAAGAATGGGTTCCCCAAGATCTTGTAACAACTGGAGGAAAATGCATGCTCTTAAAATGGGTAACAGGTATCATGCATCGGGATACCTTGAAGACCTTAAAAGAAAAGACAACAGAGCCAACAATGCCTGAGCCAGAACCAGAGCCAACTACTGAAGTACTTTTTCTTTGTAGCTATGATGGATGTGGAAAGACATTCATAGATGCTGGTGCATTGAGGAAGCATTCTCACATCCATGGAGAGAGGCAATATGTCTGTCACTACGAGGGGTGTGGAAAGAAATTTCTGGATAGCTCAAAATTGAAAAGACATTTTCTCATTCATACAGGGGAGAGGGATTTTGTGTGTCCTCATGAAGGTTGTGGTAAGGCCTTTTCCTTGGATTTCAACTTAAGGTCTCACATGAAAACACATTCCCAAGAGAACTATCATATCTGCCCGTACCCAGATTGTGGAAAGAGATATGCTCACGAATACAAACTAAAGAATCACATTGCATCCCATCATGAAAAGAATGCATCAGTGGATGTGACAAAGTACACTACTCCACCTTCAGAGAAGCAAACAAAAACTGCTAAATCGTCTGGAGGGGCATATGGTTCTGCATCATCCGACCGTCCCTATGCATGTCCATATGATGGGTGTGAAAAGGCATATATCCATGAATACAAGCTTAGACTTCATTTGAAGAGGGAACACCCGGGGATGATGCCCGATGAAAATGCTGAGCATGCTCAGGCTAATAATGTTGACAATGAAATGGATGAAGCAAGTGACCAAGATGCCTATATCGCGAAACGGTCAAATGGTAAAATTCAGAAACAGAGTAGGCCTAAACCAAGTCTTAAGTTGCCTCCTTCCAAAATTGCAAAACGCAAAGTGTCCACTCCCACTTTAACTGTAAATAAAAATTCTTGGCCCGTGAAAGATGAACCTTTTGATGAAGAAGATAGTGAGGAAACAGAAGAAGATCGTGACAATGTTGAAGATGGTTGGAGATATACTGGAGGAAACAATGAAGATGACGATGAAGAAACAGAATATGAAGACTGA 1131 0.4182 MEIHYSSSYFERRPILKSKAPAVKWVKEWVPQDLVTTGGKCMLLKWVTGIMHRDTLKTLKEKTTEPTMPEPEPEPTTEVLFLCSYDGCGKTFIDAGALRKHSHIHGERQYVCHYEGCGKKFLDSSKLKRHFLIHTGERDFVCPHEGCGKAFSLDFNLRSHMKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNASVDVTKYTTPPSEKQTKTAKSSGGAYGSASSDRPYACPYDGCEKAYIHEYKLRLHLKREHPGMMPDENAEHAQANNVDNEMDEASDQDAYIAKRSNGKIQKQSRPKPSLKLPPSKIAKRKVSTPTLTVNKNSWPVKDEPFDEEDSEETEEDRDNVEDGWRYTGGNNEDDDEETEYED 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03417 376 Gene3D Classic Zinc Finger 81 106 - -
Vian1g03417 376 Gene3D Classic Zinc Finger 138 165 - -
Vian1g03417 376 Gene3D Classic Zinc Finger 107 137 - -
Vian1g03417 376 Gene3D Classic Zinc Finger 167 199 - -
Vian1g03417 376 ProSitePatterns Zinc finger C2H2 type domain signature. 83 105 IPR013087 -
Vian1g03417 376 FunFam Putative zinc finger protein 143 107 137 - -
Vian1g03417 376 SMART c2h2final6 234 259 IPR013087 -
Vian1g03417 376 SMART c2h2final6 81 105 IPR013087 -
Vian1g03417 376 SMART c2h2final6 170 194 IPR013087 -
Vian1g03417 376 SMART c2h2final6 110 134 IPR013087 -
Vian1g03417 376 SMART c2h2final6 140 164 IPR013087 -
Vian1g03417 376 ProSitePatterns Zinc finger C2H2 type domain signature. 112 134 IPR013087 -
Vian1g03417 376 MobiDBLite consensus disorder prediction 202 227 - -
Vian1g03417 376 SUPERFAMILY beta-beta-alpha zinc fingers 121 173 IPR036236 -
Vian1g03417 376 FunFam Zinc finger transcription factor YY1 209 277 - -
Vian1g03417 376 ProSiteProfiles Zinc finger C2H2 type domain profile. 234 264 IPR013087 -
Vian1g03417 376 FunFam zinc finger transcription factor YY1 81 106 - -
Vian1g03417 376 PANTHER TRANSCRIPTIONAL REPRESSOR PROTEIN YY 18 350 - -
Vian1g03417 376 Pfam Zinc finger, C2H2 type 170 194 IPR013087 -
Vian1g03417 376 Pfam Zinc finger, C2H2 type 140 164 IPR013087 -
Vian1g03417 376 ProSiteProfiles Zinc finger C2H2 type domain profile. 81 110 IPR013087 -
Vian1g03417 376 ProSiteProfiles Zinc finger C2H2 type domain profile. 140 169 IPR013087 -
Vian1g03417 376 SUPERFAMILY beta-beta-alpha zinc fingers 84 134 IPR036236 -
Vian1g03417 376 ProSitePatterns Zinc finger C2H2 type domain signature. 142 164 IPR013087 -
Vian1g03417 376 ProSitePatterns Zinc finger C2H2 type domain signature. 236 259 IPR013087 -
Vian1g03417 376 FunFam Zinc finger protein 410 138 165 - -
Vian1g03417 376 MobiDBLite consensus disorder prediction 293 376 - -
Vian1g03417 376 ProSitePatterns Zinc finger C2H2 type domain signature. 172 195 IPR013087 -
Vian1g03417 376 ProSiteProfiles Zinc finger C2H2 type domain profile. 110 139 IPR013087 -
Vian1g03417 376 FunFam zinc finger transcription factor YY1 167 198 - -
Vian1g03417 376 MobiDBLite consensus disorder prediction 200 231 - -
Vian1g03417 376 MobiDBLite consensus disorder prediction 338 352 - -
Vian1g03417 376 SUPERFAMILY beta-beta-alpha zinc fingers 229 257 IPR036236 -
Vian1g03417 376 ProSiteProfiles Zinc finger C2H2 type domain profile. 170 199 IPR013087 -
Vian1g03417 376 Gene3D Classic Zinc Finger 207 277 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03417 10 360 C2H2 Transcription Factor Family AT4G06634 64.499 3.60e-143 409
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vian1g03417 zf-C2H2 0.009 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03417 - - gmx:100811480 651.358
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g03417 1 56634663 56638363 Vian1g03417 1 56634663 56638363 ECH