Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03414 ATGGAAAATATTGCCGCGCAGCTGAAGCGCGGCATCTCGCGGCAGTTTTCGTCGGGGTCGCTGCGGAAGAGCCTGAGCCGGCAGTTCACGCGCCAGGCCTCGCTCGATCCACGCCGGAACAACCAGCGGTTCAGCTTCGGGCGGCAGTCGTCGTTGGATCCGATACGGAGGAGCCCCGAACACGACGAGGCGGAGCTCACCGTGCCCGAGAACCTTGACTCCACCATGCAGCTGCTCTTCATGGCGTGCCGAGGCGACGTCAAGGGGGTTGAGGATTTGCTCAACGAAGGCATCGACGTCAACAGTATCGACCTCGATGGCCGCACCGCCCTCCACATCGCCGCCTGCGAAGGTCACGCCGAGGTTGCCCGGCTCCTCCTCACCCGCAAGGCCAACATCGACGCTCGCGATCGCTGGGGCAGTACCGCGGCGGCCGATGCCAAATATTATGGAAATACAGAGATTTATTACATGTTGAAGGCTCGTGGAGCGAAAGTGCCGAAAACCAGGAAGACTCCAATGACCGTTGCGAATCCTCGTGAAGTTCCGGAATATGAACTCAACCCGTTAGAGCTACAGGTTCGGAAGAGCGATGGTATTTCAAAAGGAACATATCAAGTAGCTAAATGGAATGGCACAAAGGTTGCAGTGAAGATACTTGACAAGGACAGTTATACAGATCCTGATACCATATGGCCCGAACTGGTGTTTGTTCTTTTTTCTGTACTTTATTACTCAACCTTGGCTCTAATTTTTCACAATATCAATAATTCATTCAGAAATGCTTTCAAACATGAGCTCACATTATTAGAAAGGGTGCGACATCCCAATCTGGTCCAATTTGTTGGAGCTGTAACCCAAAATGTACCTATGATGATTGTGCGTGAGTACCATGCTAAGACTGATCAAGCAAAGCTGGTGCAGCCTGACACTAACATTGATCTTTCAAGCTTGTACGTGGCACCAGAGATTTACAAAGATGAAGTATTTGATAGAAGTGCGGATGCATATTCTTTTGGTCTCATTATATATGAGGGATCGTCTGACAAGGAGTCGTCTAGTAACAGATCATCATTTAGTAAGGAGTCGTTTGGTAAGGGATCATTTGACAAGGATTCTTCTCGTAAGGATCGTCCGGTAAGGGGTCGTCTGGCCAGAGATCGTCTAGCTACGACAACTCCTCGGATTCCTTGTAAGCACGGAACGGCGCCGTATAGAGACTTGTGCGATCGATTTGGATTAGGAAAATTCGGGAGTGCGGTTCCGCGTGACAGTTTTTCGGGATTCAATGAGCCTATCGGTGTGCGGTGGTTGACGCAATCGGCGGCGGCGAAGAAACAGGAGGAGAATGATGACGCAGTGGCGAAGTTGCGCAAAGAAGCGTCTCCTGAGGAGTGTGATCAGGCTGTTGAAGGCTTGACCACTGCTAAGGCCAAAGCCATGGCGAAACGGTCGCAAGAGTCGCCGAAGGAAGTGCAAAGCGTTTTGCGGAGAGTGTGGACTGCTCTTTTGGGAATCGGTCCTGCGTTGCGAGCCGTGGCATCTATGAGTAGGCTAGTTCCTTTTGCAGTTTTCATTATCGTTCCCTTTATGGAATTCCTCCTGCCTGTGTTTCTAAAGTTATTCCCTAATATGTTGCCTTCAACATTTCAAGACAAGATGAAAGAACAGGAAGCATTGAAAAGGAGACTCAAAGCAAGAATAGAGTATGCAAGGTTCCTTCAGGATACAGTCAAAGAAATGGCAAAAGAAGTTCAGAACTCCCGAAGTGGAGAACTAAAGAAAACAGCTGAAGATCTTGATGAATTTTTAAACATGATTAGAAGAGGTGCAACTGTCTCTAATGAGGAAATTTTGGGCTTTGCTAAGTTGTTTAACGATGAACTTACTCTAGATAATATAAGCAGGCCACGATTAGTCAATATGTGCAAGTACATGGGAATCAGCCCTTTTGGCACTGATGCATACTTGCGCTATATGCTAAGAAAACATTTGCGGAGGTCGTTTACTGTGTCTGGGAAATTGAAACCAGAAGAAGCTGTACAGGCTACACTTTCTTCTCTTCCCGATGAGGTTGTGGATACTATACAGGTTACATCTTTACCCTCTGAAGATTCTGTCTCAGAGAGGAGGAGGAAACTGGAGTTCCTTGAAATGCAAGAAGAACTTATTAAGGAAGAGGAGGAGGAGAGACAAGAGGTGGTGCAAGCAAGGATGGAGAGTAGTTCTAGTCAAGTTGATAAGGCCCTCAATGAGATGAATATTTCTACAGCAAAAGAGGCTCACCAACTTGCTAGAGACAGAGCAGTGGAAAACAAAGAGCAACTGTGTGAAATTAGTCGTGCATTAGCAGTTTTAGCTTCTGCATCGATAGAGCTCTATAATAGCATGGTAAAGAAGGAGGGTTCAGATGGTCCAAAAGATGCCTTTAAGGCATATAAAGCTGCCCGAGAGGAACATGACATTACTGCTGAGTCTGGTGAAGGGGATAAAGTGTCATCAGCACTCATTAACAGAGTTGATGCTATGCTTCAAAATCTCGAGAAGGAAATAGATGACGTGGATGCAAAAATTGGTGACCGTTGGAGGCTGCTAGACAGAGATTATGATGGGAAAGTAACTGCTGAGGAGGTAGCCTCTGCTGCAATGTACTTAAAGGATACATTGGGCAAGGAGGGTATCCAAGAACTTGTCAGCAATCTTTCCAAAGATAGAGATGGGAAAATACTTGTTGAGGACATTGTTAAGTTGGGCAGTTGGAGGGAAGATGGTAATGTACCTGAAGATGGAACCAGGGAGAGTGTATGA 2808 0.4701 MENIAAQLKRGISRQFSSGSLRKSLSRQFTRQASLDPRRNNQRFSFGRQSSLDPIRRSPEHDEAELTVPENLDSTMQLLFMACRGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHAEVARLLLTRKANIDARDRWGSTAAADAKYYGNTEIYYMLKARGAKVPKTRKTPMTVANPREVPEYELNPLELQVRKSDGISKGTYQVAKWNGTKVAVKILDKDSYTDPDTIWPELVFVLFSVLYYSTLALIFHNINNSFRNAFKHELTLLERVRHPNLVQFVGAVTQNVPMMIVREYHAKTDQAKLVQPDTNIDLSSLYVAPEIYKDEVFDRSADAYSFGLIIYEGSSDKESSSNRSSFSKESFGKGSFDKDSSRKDRPVRGRLARDRLATTTPRIPCKHGTAPYRDLCDRFGLGKFGSAVPRDSFSGFNEPIGVRWLTQSAAAKKQEENDDAVAKLRKEASPEECDQAVEGLTTAKAKAMAKRSQESPKEVQSVLRRVWTALLGIGPALRAVASMSRLVPFAVFIIVPFMEFLLPVFLKLFPNMLPSTFQDKMKEQEALKRRLKARIEYARFLQDTVKEMAKEVQNSRSGELKKTAEDLDEFLNMIRRGATVSNEEILGFAKLFNDELTLDNISRPRLVNMCKYMGISPFGTDAYLRYMLRKHLRRSFTVSGKLKPEEAVQATLSSLPDEVVDTIQVTSLPSEDSVSERRRKLEFLEMQEELIKEEEEERQEVVQARMESSSSQVDKALNEMNISTAKEAHQLARDRAVENKEQLCEISRALAVLASASIELYNSMVKKEGSDGPKDAFKAYKAAREEHDITAESGEGDKVSSALINRVDAMLQNLEKEIDDVDAKIGDRWRLLDRDYDGKVTAEEVASAAMYLKDTLGKEGIQELVSNLSKDRDGKILVEDIVKLGSWREDGNVPEDGTRESV 935
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03414 935 MobiDBLite consensus disorder prediction 365 385 - -
Vian1g03414 935 ProSiteProfiles Letm1 ribosome-binding (RBD) domain profile. 562 852 IPR033122 GO:0043022
Vian1g03414 935 Gene3D Phosphorylase Kinase; domain 1 190 298 - -
Vian1g03414 935 FunFam serine/threonine-protein kinase STY46-like 187 234 - -
Vian1g03414 935 Coils Coil 717 740 - -
Vian1g03414 935 MobiDBLite consensus disorder prediction 348 364 - -
Vian1g03414 935 ProSiteProfiles Ankyrin repeat region circular profile. 106 138 - -
Vian1g03414 935 Gene3D - 822 918 - -
Vian1g03414 935 Pfam Ankyrin repeats (many copies) 93 143 IPR002110 GO:0005515
Vian1g03414 935 MobiDBLite consensus disorder prediction 23 64 - -
Vian1g03414 935 ProSiteProfiles EF-hand calcium-binding domain profile. 853 888 IPR002048 GO:0005509
Vian1g03414 935 MobiDBLite consensus disorder prediction 348 400 - -
Vian1g03414 935 FunFam serine/threonine-protein kinase STY46-like 253 299 - -
Vian1g03414 935 Coils Coil 837 857 - -
Vian1g03414 935 Pfam Protein tyrosine and serine/threonine kinase 256 302 IPR001245 GO:0004672|GO:0006468
Vian1g03414 935 SMART ANK_2a 74 102 IPR002110 GO:0005515
Vian1g03414 935 SMART ANK_2a 106 135 IPR002110 GO:0005515
Vian1g03414 935 MobiDBLite consensus disorder prediction 23 52 - -
Vian1g03414 935 Gene3D - 33 185 IPR036770 -
Vian1g03414 935 Pfam LETM1-like, RBD 511 666 IPR033122 GO:0043022
Vian1g03414 935 SUPERFAMILY EF-hand 573 916 IPR011992 -
Vian1g03414 935 SUPERFAMILY Protein kinase-like (PK-like) 208 345 IPR011009 -
Vian1g03414 935 FunFam Integrin-linked protein kinase 1 47 185 - -
Vian1g03414 935 ProSiteProfiles Ankyrin repeat profile. 106 138 IPR002110 GO:0005515
Vian1g03414 935 PANTHER LEUCINE ZIPPER-EF-HAND CONTAINING TRANSMEMBRANE PROTEIN 424 518 IPR044202 GO:0005743
Vian1g03414 935 SUPERFAMILY Ankyrin repeat 75 175 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03414 Vian-Chr1 56566979 56586102 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03414 301 345 MAP Kinase Kinase Kinase AT2G31800 51.111 1.36e-09 59.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-5 Vian1g03414 LETM1 9.4e-55 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03414 - K17800 gmx:100818667 698.353