Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03406 ATGGGTAACTGCTGGTGTAGATGGGAGTCATCAGATTATAGAGTCTCATCCAATGTAAAGTCAGAACAAAACCAGGTAACGAAGCAAAGGAATGATCATGATAGCAAGTTGCCATCAAACCCTGAGGAAGTAGAAGACCTACGGCGTGACTCAGCTGCAAATCCATTGATTGTATTCACTTACGATGAGTTGAAGATAATCACTGCAAATTTTAGGCCAGATCGTGTGTTGGGGGGAGGAGGATTTGGAAGTGTGTACAAAGGGTTCATTTCTGAGGAGTTAAGGCAGGGTCTTCCTACTCTTGCTGTAGCTGTTAAGGTTCATGATGGTGACAACAGTCATCAAGGCCACAGAGAATGGCTGGCAGAAGTGATATTTTTGGGACAGCTTTCACATTCAAATCTAGTGAAATTAGTTGGATACTGCTGCGAGGATGAACATAGAGTACTGATATATGAGTACATGTCTCGGGGAAGTGTGGAACACAACTTGTTCTCAAAAATCTTGCTTCCCATGCCATGGTCCATAAGAATGAAGATTGCATTTGGTGCAGCTAAGGGACTTGCATTTCTCCATGAAGCAGAGAAACCTGTCATCTATCGTGATTTCAAGACATCAAATATTTTATTGGACCAGGACTACAATGCAAAACTTTCTGATTTTGGCCTTGCCAAGGATGGACCAGTTGGAGACAAATCACATGTTTCTACTAGAGTAATGGGAACATATGGTTATGCAGCACCTGAATACATAATGACAGGTCATCTGACTCCTAGAAGTGATGTTTACAGTTATGGGGTTGTTCTGCTTGAACTTCTGACAGGAAGAAAATCTTTAGACAAGTTAAGACCTGCTAGAGAGCAGAATCTCACAGAATGGGCTGTTCCTTTGCTGAAGGAAAAGAAGAAATTTCTAAACATAATAGATCCAAGGTTGGATGGTGATTATCCGATTAAAGCAGTTCACAAGGCTGCAATGCTTGCATATCATTGCTTGAACCGCAATCCAAAAGCAAGGCCTCTGATGAGAGATATTGTGGACTCATTGGAGCCATTGCAGGCATACACAGAGGTTCCTGTTGGAAAAACAGTGACCATAATCAGTGAGGTTCCTGAATCTGGTTTGAAAATGAAAGATGCAAAATGA 1146 0.4171 MGNCWCRWESSDYRVSSNVKSEQNQVTKQRNDHDSKLPSNPEEVEDLRRDSAANPLIVFTYDELKIITANFRPDRVLGGGGFGSVYKGFISEELRQGLPTLAVAVKVHDGDNSHQGHREWLAEVIFLGQLSHSNLVKLVGYCCEDEHRVLIYEYMSRGSVEHNLFSKILLPMPWSIRMKIAFGAAKGLAFLHEAEKPVIYRDFKTSNILLDQDYNAKLSDFGLAKDGPVGDKSHVSTRVMGTYGYAAPEYIMTGHLTPRSDVYSYGVVLLELLTGRKSLDKLRPAREQNLTEWAVPLLKEKKKFLNIIDPRLDGDYPIKAVHKAAMLAYHCLNRNPKARPLMRDIVDSLEPLQAYTEVPVGKTVTIISEVPESGLKMKDAK 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03406 381 ProSitePatterns Serine/Threonine protein kinases active-site signature. 198 210 IPR008271 GO:0004672|GO:0006468
Vian1g03406 381 ProSitePatterns Protein kinases ATP-binding region signature. 77 106 IPR017441 GO:0005524
Vian1g03406 381 CDD STKc_IRAK 77 352 - -
Vian1g03406 381 SUPERFAMILY Protein kinase-like (PK-like) 44 349 IPR011009 -
Vian1g03406 381 ProSiteProfiles Protein kinase domain profile. 71 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g03406 381 MobiDBLite consensus disorder prediction 17 47 - -
Vian1g03406 381 FunFam Probable serine/threonine-protein kinase PBL8 155 368 - -
Vian1g03406 381 MobiDBLite consensus disorder prediction 26 47 - -
Vian1g03406 381 Pfam Protein tyrosine and serine/threonine kinase 74 349 IPR001245 GO:0004672|GO:0006468
Vian1g03406 381 PANTHER OS01G0588500 PROTEIN-RELATED 30 353 - -
Vian1g03406 381 Gene3D Transferase(Phosphotransferase) domain 1 155 364 - -
Vian1g03406 381 Gene3D Phosphorylase Kinase; domain 1 32 154 - -
Vian1g03406 381 FunFam Serine/threonine-protein kinase BIK1 38 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03406 Vian-Chr1 56454589 56459370 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03406 14 349 Glycoside Hydrolase AT3G07070 47.688 8.61e-105 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vian1g03406 PK_Tyr_Ser-Thr 1.7e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03406 - - gmx:100775722 730.709