Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03401 ATGTTTTGGATCGGAGAGAAAGAGTCAGTGCGTTGTGCGCGTGTGCTTCAGAACATTATGGAAGGTGGCCGGAAGCCGTTGAAGCCGCGCCTTGAGCGCCGGAACGCCATGAAGAACATCGATTACCGGTTAAAGGAGGATGAAGACACAGACACCGAAACGGACATAGACATAGGTAGTTTGGATGAAAGGAGTTTCCGAGTGGAAGGAATTGACGGCGAATTCGACCGTATATTTCGGAGCTTGGGCCTGTCCGGGCCCGAGGACTTTGCCATCCCGGCGGCGGCTTGGAAAGAAGCCCAGGCCCAGAAGGCCCGCAGCACAGTGAACCTTCAACACGAACCGCCACAAAATAAAAAGCAGAGAGAGGGGGGAATAAAGGGCGTTAGGCCTCCCATTTTGGAACCGACGCAGGTTACCTCCACTTGGACCTCCCAACAACCAACGGTTTCTGATTCCGTGTCACGTGATGAAGACAGTGATGTTGGTGTTAAAGCTGAAATTGAAAAGGTTTCTGCTTTGGTCGGGAATGAGACCTTTGATATTCAAAACCTGTCGCCGAATGCAACCGGATATTTCGGGTCGTGGCAAAAAGGCGAGATCTTGGGAAAGGGCTCTTTTGGAACTGTATATGAAGGCTTCACGGACGATGGGAACTTTTTTGCCGTAAAGGAGGTGTCTTTATTGGATAACGACAGCCAGGGCAAACAGAGCATTTTCCAGCTTCAGCAGGAAATATCTCTTTTGAGTCAGTTCCGACACGACAACATAGTTCGATATATTGGCACTGACAAGGACAATGACAAGCTGTATATCTTCCTCGAACTTGTAACAAAAGGATCGTTGGCAAGTCTCTATCAAAAGTATCGATTAGGGGACTCTCAAGTTTCTGCATACACAAGACAGATTTTGAGTGGCTTGAAGTATCTTCATGATCGCAATGTGGTTCACAGTGGTTGGAAATTGATGACCGAAGTATCTCAAATTTACATGGACTTCTACATTCTAACTTTACTTCATCCAAAATTTTAA 1032 0.4709 MFWIGEKESVRCARVLQNIMEGGRKPLKPRLERRNAMKNIDYRLKEDEDTDTETDIDIGSLDERSFRVEGIDGEFDRIFRSLGLSGPEDFAIPAAAWKEAQAQKARSTVNLQHEPPQNKKQREGGIKGVRPPILEPTQVTSTWTSQQPTVSDSVSRDEDSDVGVKAEIEKVSALVGNETFDIQNLSPNATGYFGSWQKGEILGKGSFGTVYEGFTDDGNFFAVKEVSLLDNDSQGKQSIFQLQQEISLLSQFRHDNIVRYIGTDKDNDKLYIFLELVTKGSLASLYQKYRLGDSQVSAYTRQILSGLKYLHDRNVVHSGWKLMTEVSQIYMDFYILTLLHPKF 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03401 343 SUPERFAMILY Protein kinase-like (PK-like) 192 317 IPR011009 -
Vian1g03401 343 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 105 317 - -
Vian1g03401 343 ProSitePatterns Protein kinases ATP-binding region signature. 202 224 IPR017441 GO:0005524
Vian1g03401 343 ProSiteProfiles Protein kinase domain profile. 196 343 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g03401 343 Gene3D Phosphorylase Kinase; domain 1 181 275 - -
Vian1g03401 343 Gene3D Transferase(Phosphotransferase) domain 1 276 323 - -
Vian1g03401 343 MobiDBLite consensus disorder prediction 135 153 - -
Vian1g03401 343 MobiDBLite consensus disorder prediction 107 162 - -
Vian1g03401 343 Pfam Protein kinase domain 197 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03401 Vian-Chr1 56414793 56417007 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03401 176 322 MAP Kinase Kinase Kinase AT4G08500 59.333 1.65e-51 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Vian1g03401 Pkinase 2.6e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03401 - K13414 var:108347588 609.372