Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03399 ATGGCACTTTGTATGCAGAGAGATTCAGTATTGAACAGGCTCATGGATTGTGGCAAGTATGTGAGGTACACTCCTGAACAGGTGGAGGCTTTGGAGAGGGTGTATGCGGAGTGTCCCAAGCCTAGCTCTTCCAGAAGGCAACAACTCATTAGGGACTGCCCTATCCTTTCCAACATTGAACAAAAGCAGATCAAAGTGTGGTTCCAGAATCGCAGATGTCGCGAAAAGCAGAGGAAGGAGGCCTCTCGTCTTCAGACAGTGAATAGAAAGCTGTCGGCGATGAACAAGTTGTTAATGGAAGAAAATGACCGTCTGCAGAAGCAGGTCTCACAGTTGGTTTATGATAATGGATACATGAAACAACAAATACACACTCAGGCGTCTGCTACTACTACTGACAATAGCTGTGAGTCTGTGGTAGTGAGTGGTCAGAAGCAACAGCAAAACCCAAAAACTCAGCATCCCCAGTGGGATGCCAACAACCCAGCTGGTCTTTTTGCAATTGCTCAAGAGACCCTGGCAGCATTTCTTTCAAAAGCTACTGGAACTGCTGTCAACTGGGTTCAAATGATTGGGATGAAGCCTGGTCCGGATTCTATTGGAATCGTTGCTGTTTCCCCCAACTGTAGTGGGGTAGCAGCAAGAGCCTGTGGCCTTGTGAGCCTAGAGCCCACTAAGGTTGCGGAGATTCTCAAAGATCGTCCATCATGGTATCGTGACTGTCGATGCCTCAATGTATTAAGCGTAGTCCCCACAGGGAATGGGGGCACAATAGAGCTCATGTACATGCAGACATATGCACCTACAACCTTGGCAGCTGCAAGAGACTTCTGGACTCTAAGATATACTTCAACATTGGAAGATGGAAGTCTTGTGATTTGTGAGAGGTCTTTGACTTCTTCAACGGGTGGCCCAACAGGGCCTCCTGCTTCAAACTTTGTAAGAGCTGAAGTGCTTCCTAGTGGCTATCTAATTAGACCCTGTGAGGGTGGTGGATCTATTATTCACATTGTTGATCACATTGATCTGGATGTTTGGAGTGTTCCTGAAGTACTGAGGCCCCTCTATGAATCTTCAAAATTCTTAGCTCAGAAATTGACCACTGCTGCCTTGCGACATGTAAGACAAATTGCACAAGAATCAAGTGGAGAAGTTCATTATGGTGGGGGTCGTCAACCTGCTGTCTTGAGAACATTTAGTCAAAGGCTTTGCAAAGGGTTTAATGATGCTGTCAATGGGTTTGTGGATGATGGTTGGTCGCCGATTGGTAATGATGGGGTGGAAGATGTGACCATAGCCATAAACTCATCTCCCAACAAGTCTTTTGGTTCCCATTACAATACATCCATGCTTCCAACATTTGGAGGTGGGGTTCTGTGTGCCAAGGCATCAATGCTCCTGCAGAATGTTCCTCCTGCTTTGCTTGTTCGATTTTTGAGGGAACATCGTTCTGAGTGGGCTGATTATGGGGTTGATGCATACTCTGCTGCATGTCTCAAAGCTAGTCCTTATGCAGTTCCTTGTGGAAGACCTAGTGGCTTCCCAAGCAGCCAGGTCATTTTGCCACTTGCTCATACTATTGAGCATGAAGAGTTCTTGGAGGTAGTTCGAATTGAGGGTAATGCATTTCCCCCTGATGATGTAGCTTTGGCGTGTGATATGTATCTATTGCAGCTGTGCAGTGGAGTTGATGAAAATGCAATTGGAGCATGCGCACAGCTTGTGTTTGCACCTATCGACGAGTCTTTTGCAGATGATGCTCTGTTACTGCCTTCTGGTTTCCGCATCATACCATTGGATCCTAAAACTGATGGTCCAGCTTCAACTAGGACACTGGATTTGGCATCAGCACTAGACATAGGATCTGGCAATGCTCGTCCTGCTGGTGAAACTGATCTGAATAACTACAACCTTAGGTCAGTCCTCACAATTGCATTCCAGTTTACTTTTGAGAACCATTTGCGGGACAATGTGGCTGTTATGGCTCGCCAATATGTGCGCAATGTTGTGAGATCAGTTCAGAGGGTTGCCATGGCAATTGCACCCTCTCGGCTCAGTACAGAGTTAGGGCCAAAGTCACTTACTGGTCCCCCAGAAGCTCTTACCTTGGCAAGATGGATCTACAGAAGCTACAGGCTTCACACCTGCACAGACCTTTTCAGAGTTGAGTCCACATCTGGTGATGCAATCTTGAAGCTACTTTGGCACCATTCAGATGCAATATTATGCTGTTCTGTAAAAACTAATGCATCTCCAGTTTTCACCTTTGCCAACCAAGCTGGACTTGATATGCTTGAAACCACTCTTGTTGCTCTTCAAGACATAATGCTGGATAAAGTTCTTGATGAATCTGGCAGGAAGCTTCTCTGCATCGAGTTCTCCAAGATAATGCAACAGGGGTTTGCATATCTTCCAGCTGGAATATGTGTATCAAGTATGAATCGACCAGTGTCCTATGAGCAGGCCATTGCATGCAAAGTTTTGGATGATAATGATTCCAATCACTGCCTTGCCTTTGTGTTCATGAACTGGTCTTTTGTCTAA 2544 0.4591 MALCMQRDSVLNRLMDCGKYVRYTPEQVEALERVYAECPKPSSSRRQQLIRDCPILSNIEQKQIKVWFQNRRCREKQRKEASRLQTVNRKLSAMNKLLMEENDRLQKQVSQLVYDNGYMKQQIHTQASATTTDNSCESVVVSGQKQQQNPKTQHPQWDANNPAGLFAIAQETLAAFLSKATGTAVNWVQMIGMKPGPDSIGIVAVSPNCSGVAARACGLVSLEPTKVAEILKDRPSWYRDCRCLNVLSVVPTGNGGTIELMYMQTYAPTTLAAARDFWTLRYTSTLEDGSLVICERSLTSSTGGPTGPPASNFVRAEVLPSGYLIRPCEGGGSIIHIVDHIDLDVWSVPEVLRPLYESSKFLAQKLTTAALRHVRQIAQESSGEVHYGGGRQPAVLRTFSQRLCKGFNDAVNGFVDDGWSPIGNDGVEDVTIAINSSPNKSFGSHYNTSMLPTFGGGVLCAKASMLLQNVPPALLVRFLREHRSEWADYGVDAYSAACLKASPYAVPCGRPSGFPSSQVILPLAHTIEHEEFLEVVRIEGNAFPPDDVALACDMYLLQLCSGVDENAIGACAQLVFAPIDESFADDALLLPSGFRIIPLDPKTDGPASTRTLDLASALDIGSGNARPAGETDLNNYNLRSVLTIAFQFTFENHLRDNVAVMARQYVRNVVRSVQRVAMAIAPSRLSTELGPKSLTGPPEALTLARWIYRSYRLHTCTDLFRVESTSGDAILKLLWHHSDAILCCSVKTNASPVFTFANQAGLDMLETTLVALQDIMLDKVLDESGRKLLCIEFSKIMQQGFAYLPAGICVSSMNRPVSYEQAIACKVLDDNDSNHCLAFVFMNWSFV 847
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03399 847 Gene3D - 202 383 IPR023393 -
Vian1g03399 847 ProSiteProfiles START domain profile. 158 386 IPR002913 GO:0008289
Vian1g03399 847 CDD homeodomain 19 79 IPR001356 GO:0003677
Vian1g03399 847 Gene3D - 15 85 - -
Vian1g03399 847 ProSiteProfiles 'Homeobox' domain profile. 22 78 IPR001356 GO:0003677
Vian1g03399 847 CDD START_ArGLABRA2_like 162 378 - -
Vian1g03399 847 CDD bZIP 71 110 - -
Vian1g03399 847 Pfam Homeodomain 20 77 IPR001356 GO:0003677
Vian1g03399 847 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 15 847 IPR044830 GO:0003700
Vian1g03399 847 SUPERFAMILY Homeodomain-like 19 81 IPR009057 -
Vian1g03399 847 Pfam START domain 168 376 IPR002913 GO:0008289
Vian1g03399 847 SUPERFAMILY Bet v1-like 168 379 - -
Vian1g03399 847 SMART HOX_1 16 82 IPR001356 GO:0003677
Vian1g03399 847 Pfam MEKHLA domain 702 846 IPR013978 -
Vian1g03399 847 Coils Coil 84 108 - -
Vian1g03399 847 SMART START_1 167 377 IPR002913 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03399 Vian-Chr1 56384359 56389733 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03399 1 847 Homeobox Transcription Factor Family AT2G34710 76.986 0.0 1341
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vian1g03399 START 4.4e-51 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03399 K09338 - gmx:100807637 1587.39